RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 IL16Q14005 1332 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 LOC101059948A0A1B0GTJ6 334 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 BICDL2A1A5D9 508 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 TO15178 435 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 WDHD1O75717 1129 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-209ENST00000556353 SCGB1D1O95968 90 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 CLTBP09497 229 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 VDRP11473 427 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 KRT33BQ14525 404 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 MELKQ14680 651 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 ZNF239Q16600 458 aaKnown RBP4.33□□□□□ -1.72
PRPF39-209ENST00000556353 BEND3Q5T5X7 828 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 SNX30Q5VWJ9 437 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 HAUS3Q68CZ6 603 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 ANKRD23Q86SG2 305 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 PIGZQ86VD9 579 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 WDTC1Q8N5D0 677 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 OLIG1Q8TAK6 271 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 RNF128Q8TEB7 428 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 PKP2Q99959 881 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 CLEC7AQ9BXN2 247 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 ITPAQ9BY32 194 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 PITPNM3Q9BZ71 974 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 TMX4Q9H1E5 349 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-209ENST00000556353 CHMP1AQ9HD42 196 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-209ENST00000556353 OLA1Q9NTK5 396 aaKnown RBP4.33□□□□□ -1.72
PRPF39-209ENST00000556353 OSGIN1Q9UJX0 560 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 RIPK3Q9Y572 518 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 MYH8P13535 1937 aa4.33□□□□□ -1.72
PRPF39-209ENST00000556353 BDP1A6H8Y1 2624 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 J3KRW8 73 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 GATA1P15976 413 aaPredicted RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 CA4P22748 312 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 PEX19P40855 299 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 CSRP3P50461 194 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 CX3CL1P78423 397 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 PNRC1Q12796 327 aaPredicted RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 KRT32Q14532 448 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 SNAI3Q3KNW1 292 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 FAM98BQ52LJ0 330 aaKnown RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 MDH1BQ5I0G3 518 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 GRTP1Q5TC63 336 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 BSPRYQ5W0U4 402 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 SUSD1Q6UWL2 747 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 INTS8Q75QN2 995 aaKnown RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 SH2D6Q7Z4S9 175 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 OR4C3Q8NH37 302 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 DYRK2Q92630 601 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 USP6NLQ92738 828 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 DCPSQ96C86 337 aaKnown RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 ZNF300Q96RE9 604 aaPredicted RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 SRSF8Q9BRL6 282 aaKnown RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 FUCA2Q9BTY2 467 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 PUS3Q9BZE2 481 aaKnown RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 MYH1P12882 1939 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 MYH7P12883 1935 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 PARP14Q460N5 1801 aa4.32□□□□□ -1.72
PRPF39-209ENST00000556353 DDX60LQ5H9U9 1706 aaKnown RBP4.32□□□□□ -1.72
PRPF39-209ENST00000556353 XIRP2A4UGR9 3374 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 AGRNO00468 2067 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 A0A1W2PR77 199 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 CDRT15L2A8MXV6 281 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 SSX4O60224 188 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 KHDRBS3O75525 346 aaKnown RBP4.31□□□□□ -1.72
PRPF39-209ENST00000556353 DUS4LO95620 317 aaKnown RBP4.31□□□□□ -1.72
PRPF39-209ENST00000556353 FAM200BP0CF97 657 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 PRLRP16471 622 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 CA6P23280 308 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 SSR1P43307 286 aaKnown RBP4.31□□□□□ -1.72
PRPF39-209ENST00000556353 DLG2Q15700 870 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 FASTKD1Q53R41 847 aaKnown RBP4.31□□□□□ -1.72
PRPF39-209ENST00000556353 C15orf52Q6ZUT6 534 aaKnown RBP4.31□□□□□ -1.72
PRPF39-209ENST00000556353 GET4Q7L5D6 327 aaPredicted RBP4.31□□□□□ -1.72
PRPF39-209ENST00000556353 MARVELD2Q8N4S9 558 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 ERLEC1Q96DZ1 483 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 CEP295NLQ96MC4 621 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 VN1R1Q9GZP7 353 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 COA1Q9GZY4 146 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 CD209Q9NNX6 404 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 A4GALTQ9NPC4 353 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 KRT84Q9NSB2 600 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 LRWD1Q9UFC0 647 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 ZDHHC2Q9UIJ5 367 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 PRDM4Q9UKN5 801 aa4.31□□□□□ -1.72
PRPF39-209ENST00000556353 RFX7Q2KHR2 1363 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 MYO3BQ8WXR4 1341 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 SYNRGQ9UMZ2 1314 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 CLRN2A0PK11 232 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.3□□□□□ -1.72
PRPF39-209ENST00000556353 GAPDHSO14556 408 aaPredicted RBP4.3□□□□□ -1.72
PRPF39-209ENST00000556353 GPIP06744 558 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 GYG1P46976 350 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 FKBP1BP68106 108 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 ENPP2Q13822 863 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 ZKSCAN8Q15776 578 aaPredicted RBP4.3□□□□□ -1.72
PRPF39-209ENST00000556353 MAPKAPK5-AS1Q8N8E1 139 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 AMER3Q8N944 861 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 OR6C1Q96RD1 312 aa4.3□□□□□ -1.72
PRPF39-209ENST00000556353 C16orf70Q9BSU1 422 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms