RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	TSPAN8	P19075	237 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	CCKBR	P32239	447 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	RPS15A	P62244	130 aa	Known RBP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	PHEX	P78562	749 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	DOC2A	Q14183	400 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	SLBP	Q14493	270 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	TBCC	Q15814	346 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	CATSPERE	Q5SY80	951 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	LIPJ	Q5W064	366 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	TTC19	Q6DKK2	380 aa	Predicted RBP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	ZNF574	Q6ZN55	896 aa	Predicted RBP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	SLCO4C1	Q6ZQN7	724 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	RPS27L	Q71UM5	84 aa	Known RBP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	TMPRSS9	Q7Z410	1059 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	MILR1	Q7Z6M3	343 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	SLCO6A1	Q86UG4	719 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	SLITRK4	Q8IW52	837 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	HOMEZ	Q8IX15	550 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	GALNT15	Q8N3T1	639 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	AFAP1L2	Q8N4X5	818 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	AGBL5	Q8NDL9	886 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	RCBTB1	Q8NDN9	531 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	OR52B6	Q8NGF0	335 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	RERG	Q96A58	199 aa	Predicted RBP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	PPM1M	Q96MI6	270 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	CMKLR1	Q99788	373 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	ZFYVE21	Q9BQ24	234 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	NTMT1	Q9BV86	223 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	PITHD1	Q9GZP4	211 aa	Predicted RBP	12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	MANSC1	Q9H8J5	431 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	ACSS2	Q9NR19	701 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	IRAK4	Q9NWZ3	460 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	PDP2	Q9P2J9	529 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	SH2B3	Q9UQQ2	575 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	KLHL20	Q9Y2M5	609 aa		12.02	□□□□□ -0.49
ABCD4-223	ENST00000555904	CABIN1	Q9Y6J0	2220 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	IGKV1-8	A0A0C4DH67	115 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	TRBC2	A0A5B9	178 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	OR2A25	A4D2G3	310 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	OR7A17	O14581	309 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CASC3	O15234	703 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	OR1F1	O43749	312 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CS	O75390	466 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ESRRB	O95718	433 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CHEK2	O96017	543 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	MT-CO3	P00414	261 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ENO1	P06733	434 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	HGF	P14210	728 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	JUP	P14923	745 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	NELFE	P18615	380 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	EPOR	P19235	508 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	VARS	P26640	1264 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	GSTM2	P28161	218 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	LSS	P48449	732 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	SLC1A6	P48664	564 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ABCE1	P61221	599 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	YBX1	P67809	324 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CSNK1G2	P78368	415 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	RELA	Q04206	551 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ZFP36L1	Q07352	338 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	PCDH1	Q08174	1060 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	GALNT1	Q10472	559 aa	Predicted RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	TRAF3	Q13114	568 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	RBBP5	Q15291	538 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ISX	Q2M1V0	245 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ARL13A	Q5H913	290 aa	Predicted RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	C10orf62	Q5T681	223 aa	Predicted RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CDCP2	Q5VXM1	449 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	GRHL2	Q6ISB3	625 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ZNF425	Q6IV72	752 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	MED27	Q6P2C8	311 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	TMIGD1	Q6UXZ0	262 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ARHGAP22	Q7Z5H3	698 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	PAQR7	Q86WK9	346 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	TMPRSS12	Q86WS5	348 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	FAM129C	Q86XR2	697 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ZNF655	Q8N720	491 aa	Predicted RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	DCBLD1	Q8N8Z6	715 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	TTL	Q8NG68	377 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	OR4F6	Q8NGB9	312 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	OR4K1	Q8NGD4	311 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	KLHL6	Q8WZ60	621 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	WDR34	Q96EX3	536 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	SLC41A2	Q96JW4	573 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CDK15	Q96Q40	435 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	NLN	Q9BYT8	704 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	CHRNA10	Q9GZZ6	450 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	ZBTB26	Q9HCK0	441 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	GEMIN8	Q9NWZ8	242 aa	Known RBP	12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	SEMA5B	Q9P283	1151 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	TRPS1	Q9UHF7	1281 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	SNX6	Q9UNH7	406 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	BTRC	Q9Y297	605 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	PCDHGA11	Q9Y5H2	935 aa		12.01	□□□□□ -0.49
ABCD4-223	ENST00000555904	DCDC2B	A2VCK2	349 aa		12	□□□□□ -0.49
ABCD4-223	ENST00000555904	ANKDD1B	A6NHY2	528 aa		12	□□□□□ -0.49
ABCD4-223	ENST00000555904	KLF11	O14901	512 aa		12	□□□□□ -0.49
ABCD4-223	ENST00000555904	HAT1	O14929	419 aa		12	□□□□□ -0.49
ABCD4-223	ENST00000555904	WFS1	O76024	890 aa		12	□□□□□ -0.49
ABCD4-223	ENST00000555904	DKK1	O94907	266 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms