RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 EBNA1BP2Q99848 306 aaKnown RBP11.3□□□□□ -0.6
CKAP4-202ENST00000552828 MESP1Q9BRJ9 268 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 CRB3Q9BUF7 120 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 DPH5Q9H2P9 285 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 ZNF304Q9HCX3 659 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 MARCH4Q9P2E8 410 aaPredicted RBP11.3□□□□□ -0.6
CKAP4-202ENST00000552828 CIDEBQ9UHD4 219 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 SLC39A10Q9ULF5 831 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 CSMD2Q7Z408 3487 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 CCDC88CQ9P219 2028 aa11.3□□□□□ -0.6
CKAP4-202ENST00000552828 ZCWPW2A0A1B0GU75 182 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 CTAGE15A4D2H0 777 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 IQCF5A8MTL0 148 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 GOLGA8KD6RF30 607 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 GOLGA8TH3BQL2 631 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 PRMT5O14744 637 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 PCDH17O14917 1159 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 ZGLP1P0C6A0 271 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 CTAGE8P0CG41 777 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 ACPPP15309 386 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 FDXRP22570 491 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 ELAVL4P26378 380 aaKnown RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 TDGF1P3P51864 188 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 EMP3P54852 163 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 VSX2P58304 361 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 CAV1Q03135 178 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 INAQ16352 499 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 LONRF1Q17RB8 773 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 MSS51Q4VC12 460 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 RNF187Q5TA31 235 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 SP5Q6BEB4 398 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 FRMPD2BQ6IN97 320 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 C8orf74Q6P047 294 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 FAM180AQ6UWF9 173 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 LINC00696Q6ZRV3 163 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 RNF44Q7L0R7 432 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 NDUFAF7Q7L592 441 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 CTAGE6Q86UF2 777 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 TAX1BP1Q86VP1 789 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 CTAGE4Q8IX94 777 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 KBTBD2Q8IY47 623 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 SRRM1Q8IYB3 904 aaKnown RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 DTWD1Q8N5C7 304 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 OR2L3Q8NG85 312 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 OR2A1Q8NGT9 310 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 HAS2Q92819 552 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 RAD51AP1Q96B01 352 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 LRRC39Q96DD0 335 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 PWWP2AQ96N64 755 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 P2RY12Q9H244 342 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 ZNF160Q9HCG1 818 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 C20orf96Q9NUD7 363 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 OLAHQ9NV23 265 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 ZNF282Q9UDV7 671 aaPredicted RBP11.29□□□□□ -0.6
CKAP4-202ENST00000552828 VPS9D1Q9Y2B5 631 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 MAU2Q9Y6X3 613 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 FAM169AQ9Y6X4 670 aa11.29□□□□□ -0.6
CKAP4-202ENST00000552828 DIDO1Q9BTC0 2240 aaKnown RBP11.28□□□□□ -0.6
CKAP4-202ENST00000552828 CROCCQ5TZA2 2017 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 NUP210LQ5VU65 1888 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 LOC105369274A0A096LPK9 316 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 LOC102723532A0A0G2JNH3 316 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 A0A1W2PPV9 198 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 KPNA5O15131 536 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 TP73O15350 636 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 BANF1O75531 89 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 JRKO75564 520 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 C1orf105O95561 183 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 PRR35P0CG20 571 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 COX6A1P12074 109 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 OGNP20774 298 aaKnown RBP11.28□□□□□ -0.6
CKAP4-202ENST00000552828 ELK3P41970 407 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 TNFSF10P50591 281 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 OCA2Q04671 838 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 PDIA2Q13087 525 aaKnown RBP11.28□□□□□ -0.6
CKAP4-202ENST00000552828 ART3Q13508 389 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 TMED2Q15363 201 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 PRTGQ2VWP7 1150 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 SPANXN3Q5MJ09 141 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 HP1BP3Q5SSJ5 553 aaPredicted RBP11.28□□□□□ -0.6
CKAP4-202ENST00000552828 FBXO42Q6P3S6 717 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 TTC23LQ6PF05 361 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 CENPUQ71F23 418 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 LRRC6Q86X45 466 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 CILP2Q8IUL8 1156 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 IGDCC3Q8IVU1 814 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 LMNTD2Q8IXW0 634 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 OR4N4Q8N0Y3 316 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 KRT222Q8N1A0 295 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 MMGT1Q8N4V1 131 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 METTL27Q8N6F8 245 aaPredicted RBP11.28□□□□□ -0.6
CKAP4-202ENST00000552828 CEP112Q8N8E3 955 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 OR1N1Q8NGS0 311 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 GABPB2Q8TAK5 448 aaPredicted RBP11.28□□□□□ -0.6
CKAP4-202ENST00000552828 CALML6Q8TD86 181 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 MIEF2Q96C03 454 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 TAAR6Q96RI8 345 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 LRRC1Q9BTT6 524 aa11.28□□□□□ -0.6
CKAP4-202ENST00000552828 ZC3H7BQ9UGR2 993 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms