RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	CCDC60	Q8IWA6	550 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	UBQLNL	Q8IYU4	475 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ADGRF3	Q8IZF5	1079 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ANKRD13C	Q8N6S4	541 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	SRFBP1	Q8NEF9	429 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TRPV1	Q8NER1	839 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	BBS10	Q8TAM1	723 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	PDCD6IP	Q8WUM4	868 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MITD1	Q8WV92	249 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MCUR1	Q96AQ8	359 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TAAR6	Q96RI8	345 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FEV	Q99581	238 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	COQ7	Q99807	217 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CPNE1	Q99829	537 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	BPIFA3	Q9BQP9	254 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TMEM79	Q9BSE2	394 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TDRD1	Q9BXT4	1180 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	LY9	Q9HBG7	655 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TMEM165	Q9HC07	324 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	HHATL	Q9HCP6	504 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MMP25	Q9NPA2	562 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	KCNJ14	Q9UNX9	436 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440		A0A0U1RRA0	63 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MBLAC1	A4D2B0	266 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MYADML2	A6NDP7	307 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FAM90A10P	A6NDY2	464 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	DUXA	A6NLW8	204 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440		H0YGN5	161 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	UBE2Q2L	H0YL09	131 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	SLC28A1	O00337	649 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	AP5Z1	O43299	807 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CDH16	O75309	829 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ERN1	O75460	977 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TGM6	O95932	706 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ALDOC	P09972	364 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RAB40AL	P0C0E4	278 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ANKRD34C	P0C6C1	535 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	DANCR	P0C864	163 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	UMPS	P11172	480 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ZNF37A	P17032	561 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MATN1	P21941	496 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	PAICS	P22234	425 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	HTR2A	P28223	471 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	APOBEC3A	P31941	199 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RYK	P34925	604 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	SLC1A6	P48664	564 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RGS4	P49798	205 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ASCL1	P50553	236 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ARHGDIB	P52566	201 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	POLR2L	P62875	67 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CBX1	P83916	185 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	OTUD4	Q01804	1114 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FPGS	Q05932	587 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	DMPK	Q09013	629 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ASPH	Q12797	758 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TIGD2	Q4W5G0	525 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RABGAP1L	Q5R372	815 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440		Q6ZPA2	131 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TRIL	Q7L0X0	811 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ERAS	Q7Z444	233 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ASPG	Q86U10	573 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ECHDC2	Q86YB7	292 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MAPKAPK5	Q8IW41	473 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	C1orf87	Q8N0U7	546 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	GPR137C	Q8N3F9	429 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	KIAA0895	Q8NCT3	520 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ADPRHL1	Q8NDY3	354 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RDM1	Q8NG50	284 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	EXD1	Q8NHP7	514 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FAM76A	Q8TAV0	307 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	PROKR1	Q8TCW9	393 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	LKAAEAR1	Q8TD35	194 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ASZ1	Q8WWH4	475 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RFK	Q969G6	155 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FAM136A	Q96C01	138 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ZNF707	Q96C28	371 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	NPY6R	Q99463	290 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	SEPHS2	Q99611	448 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ALKBH7	Q9BT30	221 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MRPL13	Q9BYD1	178 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	AMBRA1	Q9C0C7	1298 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	COG4	Q9H9E3	785 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	APMAP	Q9HDC9	416 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	IL26	Q9NPH9	171 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RDH8	Q9NYR8	311 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ZNHIT2	Q9UHR6	403 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	KCNE5	Q9UJ90	142 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FZD10	Q9ULW2	581 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CBY1	Q9Y3M2	126 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CHST2	Q9Y4C5	530 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CEPT1	Q9Y6K0	416 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	IFT140	Q96RY7	1462 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	SH3TC1	Q8TE82	1336 aa		4.01	□□□□□ -1.77
USP44-208	ENST00000552440	ZNF608	Q9ULD9	1512 aa	Predicted RBP	4.01	□□□□□ -1.77
USP44-208	ENST00000552440	SMARCA4	P51532	1647 aa		4.01	□□□□□ -1.77
USP44-208	ENST00000552440		A0A1W2PPW3	197 aa		4.01	□□□□□ -1.77
USP44-208	ENST00000552440	OR2AG2	A6NM03	316 aa		4.01	□□□□□ -1.77
USP44-208	ENST00000552440	GABRR3	A8MPY1	467 aa		4.01	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms