RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 PLD3Q8IV08 490 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 PPP4R1Q8TF05 950 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 LIN37Q96GY3 246 aaPredicted RBP20.34■□□□□ 0.85
VPS29-206ENST00000549578 FCRL4Q96PJ5 515 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 CMKLR1Q99788 373 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 PAIP2Q9BPZ3 127 aaKnown RBP20.34■□□□□ 0.85
VPS29-206ENST00000549578 CAPS2Q9BXY5 557 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 SPNS1Q9H2V7 528 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 NOL11Q9H8H0 719 aaKnown RBP20.34■□□□□ 0.85
VPS29-206ENST00000549578 IPPKQ9H8X2 491 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 SEMA4BQ9NPR2 832 aaPredicted RBP20.34■□□□□ 0.85
VPS29-206ENST00000549578 TMEM184CQ9NVA4 438 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 NKIRAS1Q9NYS0 192 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 ANKMY1Q9P2S6 941 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 LOXL2Q9Y4K0 774 aa20.34■□□□□ 0.85
VPS29-206ENST00000549578 A0A1W2PNU3 283 aaPredicted RBP20.33■□□□□ 0.85
VPS29-206ENST00000549578 PMS2P1A4D2B8 440 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 EFCAB7A8K855 629 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 MAP3K7O43318 606 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 TRIM13O60858 407 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 CCL4P13236 92 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 FOLR1P15328 257 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 HRH2P25021 359 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 WDR4P57081 412 aaKnown RBP20.33■□□□□ 0.85
VPS29-206ENST00000549578 HSP90B2PQ58FF3 399 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 XKR6Q5GH73 641 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 HHATQ5VTY9 493 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 RAB11FIP2Q7L804 512 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 MDM1Q8TC05 714 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 PELI2Q9HAT8 420 aa20.33■□□□□ 0.85
VPS29-206ENST00000549578 SIDT1Q9NXL6 827 aaKnown RBP20.33■□□□□ 0.85
VPS29-206ENST00000549578 AKAP7Q9P0M2 348 aaPredicted RBP20.33■□□□□ 0.85
VPS29-206ENST00000549578 CCDC187A0A096LP49 1063 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 PPP6CO00743 305 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 OR7A17O14581 309 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 KATNA1O75449 491 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 C1GALT1C1LP0DN25 315 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 IRF8Q02556 426 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CHIT1Q13231 466 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 DOC2AQ14183 400 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 GPR19Q15760 415 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 TMTC4Q5T4D3 741 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 ATG9BQ674R7 924 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 DNAJC22Q8N4W6 341 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 ZNF740Q8NDX6 193 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 OR4K1Q8NGD4 311 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 OR52B6Q8NGF0 335 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 TRPC4APQ8TEL6 797 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 GRAMD1AQ96CP6 724 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 GATA5Q9BWX5 397 aaPredicted RBP20.32■□□□□ 0.84
VPS29-206ENST00000549578 GSTO2Q9H4Y5 243 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 SYNPO2LQ9H987 977 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 A0A0J9YVX5 310 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 FEZF1A0PJY2 475 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 H3BQF6 201 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 ITIH1P19827 911 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CD22P20273 847 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 ARL1P40616 181 aaPredicted RBP20.32■□□□□ 0.84
VPS29-206ENST00000549578 PPP2R2AP63151 447 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CLCQ05315 142 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CYP4F3Q08477 520 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 RBBP7Q16576 425 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 C3orf38Q5JPI3 329 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CFAP157Q5JU67 520 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 FBXO42Q6P3S6 717 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 FOXR1Q6PIV2 292 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 ZCCHC23Q6ZST2 131 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 NUDCD3Q8IVD9 361 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 BMPERQ8N8U9 685 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 ATP6V1E2Q96A05 226 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CDK15Q96Q40 435 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 CHRNA10Q9GZZ6 450 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 MED4Q9NPJ6 270 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 GEMIN8Q9NWZ8 242 aaKnown RBP20.32■□□□□ 0.84
VPS29-206ENST00000549578 PILRAQ9UKJ1 303 aa20.32■□□□□ 0.84
VPS29-206ENST00000549578 A0A1B0GTL3 188 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 FGF3P11487 239 aaPredicted RBP20.31■□□□□ 0.84
VPS29-206ENST00000549578 EZRP15311 586 aaKnown RBP20.31■□□□□ 0.84
VPS29-206ENST00000549578 CCR10P46092 362 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 GABRA4P48169 554 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 CCNG1P51959 295 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 REEP5Q00765 189 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 FOXM1Q08050 763 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 SLBPQ14493 270 aaKnown RBP eCLIP20.31■□□□□ 0.84
VPS29-206ENST00000549578 RNF44Q7L0R7 432 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 MYLK4Q86YV6 388 aaPredicted RBP20.31■□□□□ 0.84
VPS29-206ENST00000549578 PRR11Q96HE9 360 aaPredicted RBP20.31■□□□□ 0.84
VPS29-206ENST00000549578 OR6C1Q96RD1 312 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 ZFYVE21Q9BQ24 234 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 EHD1Q9H4M9 534 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 ACTR8Q9H981 624 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 FGF21Q9NSA1 209 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 KLK13Q9UKR3 277 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 SATB2Q9UPW6 733 aa20.31■□□□□ 0.84
VPS29-206ENST00000549578 BIRC5O15392 142 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 WFS1O76024 890 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 CTSBP07858 339 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 SPINK2P20155 84 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 ETV5P41161 510 aa20.3■□□□□ 0.84
VPS29-206ENST00000549578 ASPHQ12797 758 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms