RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MAGEB17A8MXT2 336 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 J3KTA2 159 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 PCDH7O60245 1069 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 GREM1O60565 184 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 DBTP11182 482 aaKnown RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 AMD1P17707 334 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SERPINA4P29622 427 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 HLA-FP30511 346 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 ETV3P41162 512 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 NRIP1P48552 1158 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 AP1S1P61966 158 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 ATG9BQ674R7 924 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 KLHL17Q6TDP4 642 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 PTOV1Q86YD1 416 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 NAGSQ8N159 534 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 C1orf52Q8N6N3 182 aaKnown RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 KLHL23Q8NBE8 558 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 UTP15Q8TED0 518 aaKnown RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 LZICQ8WZA0 190 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 DNASE1L2Q92874 299 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 IGSF21Q96ID5 467 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 CDK5RAP1Q96SZ6 601 aaKnown RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 KCTD5Q9NXV2 234 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SNX6Q9UNH7 406 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 GNG14A0A1W2PPG7 69 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 FABP3P05413 133 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 RETP07949 1114 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 CD36P16671 472 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 RRM2P31350 389 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 CRATP43155 626 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 PPP3CCP48454 512 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 ARHGDIAP52565 204 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SP3Q02447 781 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 VMACQ2NL98 169 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 PLEKHG6Q3KR16 790 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 COX20Q5RI15 118 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 MACC1Q6ZN28 852 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 P2RY8Q86VZ1 359 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 HIPK1Q86Z02 1210 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SLC44A2Q8IWA5 706 aaPredicted RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 DCAF4L2Q8NA75 395 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 OR2AP1Q8NGE2 309 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 CYB5D2Q8WUJ1 264 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 HPS1Q92902 700 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 C6orf62Q9GZU0 229 aaPredicted RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 BRD9Q9H8M2 597 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SERPINB7O75635 380 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 HPRP00739 348 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SRCP12931 536 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 ELAVL2Q12926 359 aaKnown RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 ASTLQ6HA08 431 aaPredicted RBP14.56□□□□□ -0.08
USP28-214ENST00000545540 MMP21Q8N119 569 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 CHPT1Q8WUD6 406 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 TPT1P8Q9HAU6 139 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 TRIM39Q9HCM9 518 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 IL1RAPQ9NPH3 570 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 FZD4Q9ULV1 537 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 SH3BP1Q9Y3L3 701 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 TRIM17Q9Y577 477 aa14.56□□□□□ -0.08
USP28-214ENST00000545540 REV3LO60673 3130 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 SCN5AQ14524 2016 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 FAM220BPB1ANY3 271 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 FAM227AF5H4B4 570 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 EPN2O95208 641 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 RPLP2P05387 115 aaKnown RBP14.55□□□□□ -0.08
USP28-214ENST00000545540 ZNF12P17014 697 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 PSMA3P25788 255 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 PDHA2P29803 388 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 CRYBA2P53672 197 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 GAB1Q13480 694 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 GANABQ14697 944 aaKnown RBP14.55□□□□□ -0.08
USP28-214ENST00000545540 LHX8Q68G74 356 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 TMEM25Q86YD3 366 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 ZZZ3Q8IYH5 903 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 RAD18Q9NS91 495 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 TRIM64BA6NI03 449 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 RFXAPO00287 272 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 IGSF6O95976 241 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 INHAP05111 366 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 PORP16435 677 aaPredicted RBP14.55□□□□□ -0.08
USP28-214ENST00000545540 LIPAP38571 399 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 NKX2-5P52952 324 aaPredicted RBP14.55□□□□□ -0.08
USP28-214ENST00000545540 WNT3P56703 355 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 SLC35A2P78381 396 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 ABHD18Q0P651 414 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 EPS8Q12929 822 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 INAVAQ3KP66 663 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 SHQ1Q6PI26 577 aaKnown RBP14.55□□□□□ -0.08
USP28-214ENST00000545540 OTOP2Q7RTS6 562 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 AADATQ8N5Z0 425 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 TERB1Q8NA31 727 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 TRIT1Q9H3H1 467 aaKnown RBP14.55□□□□□ -0.08
USP28-214ENST00000545540 ZDHHC3Q9NYG2 299 aa14.55□□□□□ -0.08
USP28-214ENST00000545540 GABRR3A8MPY1 467 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 C1SP09871 688 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 ETFAP13804 333 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 CD9P21926 228 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 CST5P28325 142 aaPredicted RBP14.54□□□□□ -0.08
USP28-214ENST00000545540 CD97P48960 835 aa14.54□□□□□ -0.08
USP28-214ENST00000545540 PFN3P60673 137 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms