RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 K7EPI3 171 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 SLC28A1O00337 649 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 CHUKO15111 745 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 SCAMP1O15126 338 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 MID1O15344 667 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 MGRN1O60291 552 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KDM1AO60341 852 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 UGDHO60701 494 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 SLCO2B1O94956 709 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 TSPAN12O95859 305 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KRT6AP02538 564 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KRT6BP04259 564 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 CHRNGP07510 517 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 PRKAR1AP10644 381 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 MTHFD2P13995 350 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 EPB42P16452 691 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 LBPP18428 481 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 UGT1A6P19224 532 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 UGT1A1P22309 533 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 UGT1A4P22310 534 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 CCND1P24385 295 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 MAT2AP31153 395 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 UGT1A3P35503 534 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 GGT5P36269 586 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 PGM1P36871 562 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 GPR1P46091 355 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KRT6CP48668 564 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 MRPL19P49406 292 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 CDKN1CP49918 316 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 RALGDSQ12967 914 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KLF10Q13118 480 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ART3Q13508 389 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 SPIDRQ14159 915 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 NAA25Q14CX7 972 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 AGERQ15109 404 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 RBBP7Q16576 425 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 DEFB109BQ30KR1 87 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 TRMT5Q32P41 509 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 LSM12Q3MHD2 195 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 COQ5Q5HYK3 327 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ATP1A1-AS1Q5TC04 95 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KANK2Q63ZY3 851 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 KIAA1161Q6NSJ0 714 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 PRMT9Q6P2P2 845 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ADAMTSL4Q6UY14 1074 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 Q6ZVL8 140 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ASB18Q6ZVZ8 466 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 CHSY3Q70JA7 882 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 PARS2Q7L3T8 475 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 HSD11B1LQ7Z5J1 315 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 RAB42Q8N4Z0 105 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 BEND7Q8N7W2 519 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 KYQ8NBH2 561 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 FBXO15Q8NCQ5 510 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 ASB12Q8WXK4 309 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 STMN2Q93045 179 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 EXT2Q93063 718 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 NKD1Q969G9 470 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 POP5Q969H6 163 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 METTL2AQ96IZ6 378 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 PPP3R2Q96LZ3 170 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 CCDC138Q96M89 665 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 COQ10AQ96MF6 247 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 RIOK2Q9BVS4 552 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 NUF2Q9BZD4 464 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 CD244Q9BZW8 370 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 RSPH9Q9H1X1 276 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 ABCG8Q9H221 673 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ZNF395Q9H8N7 513 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 RMI1Q9H9A7 625 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 TRIM39Q9HCM9 518 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ARL15Q9NXU5 204 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 POLG2Q9UHN1 485 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 PTBP2Q9UKA9 531 aaKnown RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 AP3M1Q9Y2T2 418 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 STAB1Q9NY15 2570 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 ZNF469Q96JG9 3925 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 COL6A5A8TX70 2615 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 LRRC72A6NJI9 287 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 KIAA1324LA8MWY0 1029 aaPredicted RBP8.09□□□□□ -1.11
CHD4-208ENST00000540960 PSMD12O00232 456 aaPredicted RBP8.09□□□□□ -1.11
CHD4-208ENST00000540960 CDC7O00311 574 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 NTN3O00634 580 aaPredicted RBP8.09□□□□□ -1.11
CHD4-208ENST00000540960 GSC2O15499 205 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 LATO43561 262 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 RGS14O43566 566 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 STK16O75716 305 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 RNASEH2AO75792 299 aaKnown RBP8.09□□□□□ -1.11
CHD4-208ENST00000540960 TM7SF2O76062 418 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 CDK14O94921 469 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 CBX6O95503 412 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 NPPAP01160 153 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 JMJD7P0C870 316 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 EBLN1P0CF75 366 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 T-ENOLP0DO92 83 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 COX4I1P13073 169 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 MAPK1P28482 360 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 ETV3P41162 512 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 RPIAP49247 311 aa8.09□□□□□ -1.11
CHD4-208ENST00000540960 PRLHRP49683 370 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms