RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SMYD1Q8NB12 490 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 BADQ92934 168 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 DCAF13Q9NV06 445 aaKnown RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 RHCGQ9UBD6 479 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 VPS29Q9UBQ0 182 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 AGAP14A8MT82 685 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 NME6O75414 186 aaPredicted RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 CNTN1Q12860 1018 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 ARHGAP22Q7Z5H3 698 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 C11orf96Q7Z7L8 435 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 PAPD5Q8NDF8 572 aaKnown RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 EPB41L1Q9H4G0 881 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 PDP1Q9P0J1 537 aaPredicted RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 SPASTQ9UBP0 616 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 MRPS23Q9Y3D9 190 aaKnown RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 TESMINQ9Y4I5 508 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 MAP4K5Q9Y4K4 846 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 CFAP99D6REC4 459 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 H0YJX3 145 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 TLL1O43897 1013 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 PCDH7O60245 1069 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 IMPA1P29218 277 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 SLC6A12P48065 614 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 ZBED5Q49AG3 693 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 FAM109BQ6ICB4 259 aaPredicted RBP16.34■□□□□ 0.21
USP28-208ENST00000540438 DUS1LQ6P1R4 473 aaKnown RBP16.34■□□□□ 0.21
USP28-208ENST00000540438 CCDC149Q6ZUS6 474 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 NAGSQ8N159 534 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 CBARPQ8N350 705 aaPredicted RBP16.34■□□□□ 0.21
USP28-208ENST00000540438 WDR48Q8TAF3 677 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 MRGPRX3Q96LB0 322 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 SIRT5Q9NXA8 310 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 DNAJB9Q9UBS3 223 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 IL36AQ9UHA7 158 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 EVPLLA8MZ36 301 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 HTR1AP08908 422 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 VIPR1P32241 457 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 HPCAP84074 193 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 MAD2L1Q13257 205 aaPredicted RBP16.34■□□□□ 0.21
USP28-208ENST00000540438 ZNF385BQ569K4 471 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 CCNYL2Q5T2Q4 361 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 LAIR2Q6ISS4 152 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 LIPIQ6XZB0 460 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 SZRD1Q7Z422 152 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 THAP5Q7Z6K1 395 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 SPPL2AQ8TCT8 520 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 HM13Q8TCT9 377 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 CSF3RQ99062 836 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 TMEM184CQ9NVA4 438 aa16.34■□□□□ 0.21
USP28-208ENST00000540438 BMP10O95393 424 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 TIMP1P01033 207 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 SERPIND1P05546 499 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 LINC00271P0C7V0 271 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 ETFAP13804 333 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 POLR2LP62875 67 aaKnown RBP16.33■□□□□ 0.21
USP28-208ENST00000540438 DHCR24Q15392 516 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 FNDC3BQ53EP0 1204 aaKnown RBP16.33■□□□□ 0.21
USP28-208ENST00000540438 LYPLAL1Q5VWZ2 237 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 NLGN4XQ8N0W4 816 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 ATG16L2Q8NAA4 619 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 PLA2G15Q8NCC3 412 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 ZNF555Q8NEP9 628 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 TNIP2Q8NFZ5 429 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 OR7G3Q8NG95 312 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 HSH2DQ96JZ2 352 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 ABCG4Q9H172 646 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 RUBCNLQ9H714 662 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 SNX8Q9Y5X2 465 aa16.33■□□□□ 0.21
USP28-208ENST00000540438 LOC100130705A0A1B0GUX0 176 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 H3BM21 787 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 NUAK1O60285 661 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 TULP3O75386 442 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 RECQL5O94762 991 aaPredicted RBP16.33■□□□□ 0.2
USP28-208ENST00000540438 VIPP01282 170 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 PSMB5P28074 263 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 DGKGP49619 791 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 MLLT10P55197 1068 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 WNT3P56703 355 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 KCTD21Q4G0X4 260 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 GPR153Q6NV75 609 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 PACRGLQ8N7B6 248 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 ARL10Q8N8L6 244 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 CHDHQ8NE62 594 aaPredicted RBP16.33■□□□□ 0.2
USP28-208ENST00000540438 ZNF480Q8WV37 535 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 GLYATL1Q969I3 302 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 PYURFQ96I23 114 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 LYSMD1Q96S90 227 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 OSBPL10Q9BXB5 764 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 RDH14Q9HBH5 336 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 FZD4Q9ULV1 537 aa16.33■□□□□ 0.2
USP28-208ENST00000540438 MGAT4DA6NG13 374 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 GFYI3L273 518 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 RFXAPO00287 272 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 LZTS3O60299 673 aaPredicted RBP16.32■□□□□ 0.2
USP28-208ENST00000540438 PFDN1O60925 122 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 LATS1O95835 1130 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 PTPN2P17706 415 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 SOAT1P35610 550 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 MPP7Q5T2T1 576 aa16.32■□□□□ 0.2
USP28-208ENST00000540438 EID3Q8N140 333 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms