RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	LMX1B	O60663	402 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	NME6	O75414	186 aa	Predicted RBP	4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	RAD51D	O75771	328 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	HMOX1	P09601	288 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	SERPINB6	P35237	376 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	DCT	P40126	519 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	HERV-K104	P61576	105 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	RPL36A	P83881	106 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	CDR2	Q01850	454 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	OPCML	Q14982	345 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	RBBP5	Q15291	538 aa	Known RBP	4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	SLC39A12	Q504Y0	691 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	SLC25A53	Q5H9E4	307 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	LCN1P1	Q5VSP4	162 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	ARHGEF16	Q5VV41	709 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	C19orf48	Q6RUI8	117 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	KLHDC9	Q8NEP7	349 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	FCAMR	Q8WWV6	532 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	AP2M1	Q96CW1	435 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	NDN	Q99608	321 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	ATG101	Q9BSB4	218 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	FAM49A	Q9H0Q0	323 aa	Predicted RBP	4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	DBNDD1	Q9H9R9	158 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	FLRT3	Q9NZU0	649 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	STX8	Q9UNK0	236 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	GPR132	Q9UNW8	380 aa		4.9	□□□□□ -1.63
PRKDC-208	ENST00000536710	C13orf42	A0A1B0GVH6	325 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	ILVBL	A1L0T0	632 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	FAM172BP	A6NC97	362 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	DDX39A	O00148	427 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	FPGT	O14772	594 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	EPHB6	O15197	1021 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	KIN	O60870	393 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	KERA	O60938	352 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	NGF	P01138	241 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	SBK2	P0C263	348 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	FRMD6-AS1	P0C7T7	363 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	HLA-DPA1	P20036	260 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	CYP2A7	P20853	494 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	PHEX	P78562	749 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	AKAP17A	Q02040	695 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	ACTN3	Q08043	901 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	ZNF789	Q5FWF6	425 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	NHLRC1	Q6VVB1	395 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	IL17REL	Q6ZVW7	336 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	TRPT1	Q86TN4	253 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	AQP12A	Q8IXF9	295 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	PSMA8	Q8TAA3	256 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	LRRC8C	Q8TDW0	803 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	ST7L	Q8TDW4	575 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	CKAP2	Q8WWK9	683 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	CDKN2AIPNL	Q96HQ2	116 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	SHARPIN	Q9H0F6	387 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	CPVL	Q9H3G5	476 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	CUEDC2	Q9H467	287 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	ZNF556	Q9HAH1	456 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	NOCT	Q9UK39	431 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	FBXW2	Q9UKT8	454 aa		4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	PA2G4	Q9UQ80	394 aa	Known RBP	4.89	□□□□□ -1.63
PRKDC-208	ENST00000536710	TRIP12	Q14669	1992 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	TRAV18	A0A075B6X5	111 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710		A0A0G2JLW4	131 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710		E5RGE8	158 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	SLC22A2	O15244	555 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	ATP9A	O75110	1047 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	RTN2	O75298	545 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	SLC22A3	O75751	556 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	KRT36	O76013	467 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	DFFB	O76075	338 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	GLCE	O94923	617 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	BAG3	O95817	575 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	EDN1	P05305	212 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	DLAT	P10515	647 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	F3	P13726	295 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	PAX1	P15863	534 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	RPA4	Q13156	261 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	CDC37	Q16543	378 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	FUT11	Q495W5	492 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	IFI44L	Q53G44	452 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	FAM76B	Q5HYJ3	339 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	STPG1	Q5TH74	334 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	LRRC38	Q5VT99	294 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	SH2D5	Q6ZV89	423 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	MARK2	Q7KZI7	788 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	G2E3	Q7L622	706 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	SLC16A9	Q7RTY1	509 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	TRMT1L	Q7Z2T5	733 aa	Known RBP	4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	ANKRD33	Q7Z3H0	272 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	CHCHD4	Q8N4Q1	142 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	LRTM2	Q8N967	370 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	LPCAT1	Q8NF37	534 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	OR4C15	Q8NGM1	316 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	SNX21	Q969T3	373 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	LMLN	Q96KR4	655 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	C4orf45	Q96LM5	186 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	BTBD9	Q96Q07	612 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	IDI2	Q9BXS1	227 aa		4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	4.88	□□□□□ -1.63
PRKDC-208	ENST00000536710	RNPEPL1	Q9HAU8	725 aa		4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms