RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 SYVN1Q86TM6 617 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 CCDC190Q86UF4 302 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 FAM124AQ86V42 546 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 CARNMT1Q8N4J0 409 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 OR8K5Q8NH50 307 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 BPIFB1Q8TDL5 484 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 NSUN4Q96CB9 384 aaKnown RBP3.62□□□□□ -1.83
MCF2-210ENST00000536274 WDR89Q96FK6 387 aaPredicted RBP3.62□□□□□ -1.83
MCF2-210ENST00000536274 WBP1Q96G27 269 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 PRMT6Q96LA8 375 aaPredicted RBP3.62□□□□□ -1.83
MCF2-210ENST00000536274 CPXM1Q96SM3 734 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 DPH7Q9BTV6 452 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 PAPOLGQ9BWT3 736 aaKnown RBP3.62□□□□□ -1.83
MCF2-210ENST00000536274 MRPL4Q9BYD3 311 aaKnown RBP3.62□□□□□ -1.83
MCF2-210ENST00000536274 TMEM168Q9H0V1 697 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 LHX5Q9H2C1 402 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 SETD4Q9NVD3 440 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 ING3Q9NXR8 418 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 VNN3Q9NY84 501 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 UBP1Q9NZI7 540 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 XPR1Q9UBH6 696 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 ABCG2Q9UNQ0 655 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 SLC9A8Q9Y2E8 581 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 TNPO3Q9Y5L0 923 aaKnown RBP3.62□□□□□ -1.83
MCF2-210ENST00000536274 V9GYH0 126 aa3.62□□□□□ -1.83
MCF2-210ENST00000536274 TEX13CA0A0J9YWL9 993 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 LCHNA4D1U4 455 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TCP10L2B9ZVM9 353 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 BCKDKO14874 412 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 KHNYNO15037 678 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 PER2O15055 1255 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 KPNA5O15131 536 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 FZD6O60353 706 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 EIF1BO60739 113 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 H2AFYO75367 372 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 RFPL3O75679 317 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CST1P01037 141 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 RAF1P04049 648 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 ITGB1P05556 798 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CSF3P09919 207 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 ANKRD34CP0C6C1 535 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 BMP1P13497 986 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 F8A1P23610 371 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 HSD3B2P26439 372 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 APEX1P27695 318 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 VIPR1P32241 457 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 ATP5C1P36542 298 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 EIF1P41567 113 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 HOXA1P49639 335 aaPredicted RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 DIO3P55073 304 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 RPS7P62081 194 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 SLC35A2P78381 396 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 DSC2Q02487 901 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 SLC25A11Q02978 314 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 PRKCDQ05655 676 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CDH17Q12864 832 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 GRM1Q13255 1194 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 KCNC3Q14003 757 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 SNAPC1Q16533 368 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TIGD6Q17RP2 521 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 LGALSLQ3ZCW2 172 aaPredicted RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 MPPE1Q53F39 396 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 PDZK1Q5T2W1 519 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 MANEALQ5VSG8 457 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 SAXO2Q658L1 398 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 JADE1Q6IE81 842 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 KIAA1841Q6NSI8 718 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 APOBEC3HQ6NTF7 200 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 UNQ6494/PRO21346Q6UXR6 183 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 GCNT7Q6ZNI0 430 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CEP68Q76N32 757 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 NLRC3Q7RTR2 1065 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CBLN2Q8IUK8 224 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 SLC41A1Q8IVJ1 513 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TP53INP2Q8IXH6 220 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 PELI3Q8N2H9 469 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 FSTL5Q8N475 847 aaPredicted RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 TMEM151AQ8N4L1 468 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TBC1D19Q8N5T2 526 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 C7orf31Q8N865 590 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 XXYLT1Q8NBI6 393 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TXNDC5Q8NBS9 432 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 FBXL13Q8NEE6 735 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 BEST2Q8NFU1 509 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 ENKURQ8TC29 256 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 DNAJA4Q8WW22 397 aaPredicted RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 MTERF3Q96E29 417 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CCDC126Q96EE4 140 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 DUS3LQ96G46 650 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 PIWIL1Q96J94 861 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 FAM84BQ96KN1 310 aaPredicted RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 PPM1MQ96MI6 270 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 SAMD11Q96NU1 681 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TWNKQ96RR1 684 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 CCM2Q9BSQ5 444 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 TTLL2Q9BWV7 592 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 REG4Q9BYZ8 158 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 ELAC1Q9H777 363 aaKnown RBP3.61□□□□□ -1.83
MCF2-210ENST00000536274 ELP3Q9H9T3 547 aa3.61□□□□□ -1.83
MCF2-210ENST00000536274 KCNK12Q9HB15 430 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms