RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ATXN7O15265 892 aaPredicted RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 CREG1O75629 220 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 KLF7O75840 302 aaPredicted RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 ALDOAP04075 364 aaKnown RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 MYBL2P10244 700 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 GGT5P36269 586 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 SLC6A12P48065 614 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 HNMTP50135 292 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 ARSFP54793 590 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 VSX2P58304 361 aaPredicted RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 NFKB2Q00653 900 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 MC1RQ01726 317 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 CDC20Q12834 499 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 TSTA3Q13630 321 aaPredicted RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 GRM7Q14831 915 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 TGFBIQ15582 683 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 OR4D1Q15615 310 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 NKAIN1Q4KMZ8 207 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 ATP1A1-AS1Q5TC04 95 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 THEMIS2Q5TEJ8 643 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 MROH9Q5TGP6 573 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 MRPL14Q6P1L8 145 aaKnown RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 TRMT10CQ7L0Y3 403 aaKnown RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 ISCA2Q86U28 154 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 CENPLQ8N0S6 344 aaPredicted RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 RHBDF1Q96CC6 855 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 MED8Q96G25 268 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 HAUS8Q9BT25 410 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 NDC1Q9BTX1 674 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 DHRS4Q9BTZ2 278 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 UNKQ9C0B0 810 aaKnown RBP12.4□□□□□ -0.42
VPS28-216ENST00000533806 EPB41L4BQ9H329 900 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 IGSF5Q9NSI5 407 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 CUTCQ9NTM9 273 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 SEC16AO15027 2179 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 HYKKA2RU49 373 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 TAPBPO15533 448 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 CNOT3O75175 753 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 KATNA1O75449 491 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 C2P06681 752 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 ANXA5P08758 320 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 ABHD2P08910 425 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 AGXTP21549 392 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 GCAP28676 217 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 TNFRSF8P28908 595 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 MAGEA12P43365 314 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 RPS18P62269 152 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 RPS15P62841 145 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 SNRPNP63162 240 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 DCDP81605 110 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 BMPR2Q13873 1038 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 COL9A2Q14055 689 aaPredicted RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 NCF4Q15080 339 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 FAM214AQ32MH5 1076 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 C1orf189Q5VU69 101 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 TTLL10Q6ZVT0 673 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 COX15Q7KZN9 410 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 VN1R4Q7Z5H5 301 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 CCDC91Q7Z6B0 441 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 C17orf64Q86WR6 236 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 PLD3Q8IV08 490 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 ENDOVQ8N8Q3 282 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 ADAMTS17Q8TE56 1095 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 DCAKDQ8WVC6 231 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 NEIL2Q969S2 332 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 TM4SF19Q96DZ7 209 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 MRRFQ96E11 262 aaKnown RBP12.39□□□□□ -0.43
VPS28-216ENST00000533806 C10orf90Q96M02 699 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 CATSPER2Q96P56 530 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 GPR78Q96P69 363 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 PAFAH2Q99487 392 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 ABCF3Q9NUQ8 709 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 ZNF180Q9UJW8 692 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 TCFL5Q9UL49 500 aa12.39□□□□□ -0.43
VPS28-216ENST00000533806 A0A087WUV0 522 aaPredicted RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 TK2O00142 265 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 P2RX6O15547 441 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 RIPK2O43353 540 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 LCMT2O60294 686 aaKnown RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 PRKAR1AP10644 381 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 CDH1P12830 882 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 MTHFD2P13995 350 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 GDF5P43026 501 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 IL10RAQ13651 578 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 CSHL1Q14406 222 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 UGT8Q16880 541 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 HKDC1Q2TB90 917 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 C18orf21Q32NC0 220 aaPredicted RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 FAM69BQ5VUD6 431 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 OVCH1Q7RTY7 1134 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 SYVN1Q86TM6 617 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 THOC6Q86W42 341 aaKnown RBP12.38□□□□□ -0.43
VPS28-216ENST00000533806 GPSM1Q86YR5 675 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 TMEM151BQ8IW70 566 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 DTWD1Q8N5C7 304 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 EXD3Q8N9H8 876 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 PDPRQ8NCN5 879 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 EXTL1Q92935 676 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 THAP11Q96EK4 314 aa12.38□□□□□ -0.43
VPS28-216ENST00000533806 ATOH8Q96SQ7 321 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms