RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NMRAL1Q9HBL8 299 aa19■□□□□ 0.63
CPSF1-209ENST00000532725 IRAK4Q9NWZ3 460 aa19■□□□□ 0.63
CPSF1-209ENST00000532725 DHCR7Q9UBM7 475 aaKnown RBP19■□□□□ 0.63
CPSF1-209ENST00000532725 KCND3Q9UK17 655 aa19■□□□□ 0.63
CPSF1-209ENST00000532725 SRPK3Q9UPE1 567 aa19■□□□□ 0.63
CPSF1-209ENST00000532725 MRPS18BQ9Y676 258 aaKnown RBP19■□□□□ 0.63
CPSF1-209ENST00000532725 KCNE1BA0A087WTH5 132 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 A0A087X1B8 175 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 HAT1O14929 419 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 EZRP15311 586 aaKnown RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 GCAP28676 217 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 TYK2P29597 1187 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 ARSFP54793 590 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 CYP4F2P78329 520 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 COL9A2Q14055 689 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 SLC29A2Q14542 456 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 C18orf21Q32NC0 220 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 YOD1Q5VVQ6 348 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 FRA10AC1Q70Z53 315 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 TBC1D1Q86TI0 1168 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 CENPLQ8N0S6 344 aaPredicted RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 ABHD11Q8NFV4 315 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 OR4K1Q8NGD4 311 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 PROKR1Q8TCW9 393 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 ISL2Q96A47 359 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 EGFL8Q99944 293 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 FAM117AQ9C073 453 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 TLK1Q9UKI8 766 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 FARSAQ9Y285 508 aaKnown RBP18.99■□□□□ 0.63
CPSF1-209ENST00000532725 IKBKGQ9Y6K9 419 aa18.99■□□□□ 0.63
CPSF1-209ENST00000532725 A0A096LPK6 155 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 HYKKA2RU49 373 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 ZNF891A8MT65 544 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-209ENST00000532725 TAPBPO15533 448 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 KATNA1O75449 491 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 SLU7O95391 586 aaKnown RBP18.98■□□□□ 0.63
CPSF1-209ENST00000532725 RECKO95980 971 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 RAB40ALP0C0E4 278 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 AGXTP21549 392 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 ALAS2P22557 587 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 PTPN4P29074 926 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 GGT5P36269 586 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 MAGEA12P43365 314 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 IRF9Q00978 393 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 PRTGQ2VWP7 1150 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 FAM214AQ32MH5 1076 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 CRTC2Q53ET0 693 aaPredicted RBP18.98■□□□□ 0.63
CPSF1-209ENST00000532725 C1orf189Q5VU69 101 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 ADCK2Q7Z695 626 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 THOC6Q86W42 341 aaKnown RBP18.98■□□□□ 0.63
CPSF1-209ENST00000532725 PLD3Q8IV08 490 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 KLHDC8AQ8IYD2 350 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 STAG3L4Q8TBR4 150 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 KCTD4Q8WVF5 259 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 STARD8Q92502 1023 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 GPR78Q96P69 363 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 ALG9Q9H6U8 611 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 CUTCQ9NTM9 273 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 SLC22A14Q9Y267 594 aa18.98■□□□□ 0.63
CPSF1-209ENST00000532725 EXOC1LA0A1B0GW35 172 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 NCF1BA6NI72 391 aaPredicted RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 NCF1CA8MVU1 366 aaPredicted RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 LCMT2O60294 686 aaKnown RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 KRT38O76015 456 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 MED26O95402 600 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 ONECUT2O95948 504 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 EIF2S1P05198 315 aaKnown RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 CDH1P12830 882 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 NCF1P14598 390 aaPredicted RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 TFEBP19484 476 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 CNTFP26441 200 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 GDF5P43026 501 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 SLC6A12P48065 614 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 SERPINB8P50452 374 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 RPS15P62841 145 aaKnown RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 DCDP81605 110 aaKnown RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 SULT1C3Q6IMI6 304 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 ADGRD1Q6QNK2 874 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 TTLL10Q6ZVT0 673 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 TTC29Q8NA56 475 aaPredicted RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 NEIL2Q969S2 332 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 NLNQ9BYT8 704 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 TXLNGQ9NUQ3 528 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 PTBP2Q9UKA9 531 aaKnown RBP18.97■□□□□ 0.63
CPSF1-209ENST00000532725 RNF112Q9ULX5 631 aa18.97■□□□□ 0.63
CPSF1-209ENST00000532725 FAM208BQ5VWN6 2430 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 IGSF10Q6WRI0 2623 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 MDC1Q14676 2089 aaKnown RBP18.96■□□□□ 0.63
CPSF1-209ENST00000532725 CACNA1GO43497 2377 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 DSCR3O14972 297 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 CREG1O75629 220 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 KLHL2O95198 593 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 ITGAXP20702 1163 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 CCR8P51685 355 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 EMP3P54852 163 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 RPS15AP62244 130 aaKnown RBP18.96■□□□□ 0.63
CPSF1-209ENST00000532725 MC1RQ01726 317 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 RHDQ02161 417 aa18.96■□□□□ 0.63
CPSF1-209ENST00000532725 ACAP2Q15057 778 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms