RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ISG20Q96AZ6 181 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 ELSPBP1Q96BH3 223 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 EID2BQ96D98 161 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 MTBPQ96DY7 904 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 LRRC46Q96FV0 321 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CDKN2AIPNLQ96HQ2 116 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ELMO2Q96JJ3 720 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 KLHL32Q96NJ5 620 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 FAM111AQ96PZ2 611 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NDNQ99608 321 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ADGRE3Q9BY15 652 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 GPR63Q9BZJ6 419 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 FAM107BQ9H098 131 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CHST8Q9H2A9 424 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 MFSD1Q9H3U5 465 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 RHOJQ9H4E5 214 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 FAM96AQ9H5X1 160 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CAB39LQ9H9S4 337 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NECTIN3Q9NQS3 549 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SNX15Q9NRS6 342 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NLE1Q9NVX2 485 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 ELOVL2Q9NXB9 296 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NSMCE4AQ9NXX6 385 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 PSD3Q9NYI0 1048 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 SENP1Q9P0U3 644 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 NFKBIL1Q9UBC1 381 aaPredicted RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 CD207Q9UJ71 328 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 CDC42EP3Q9UKI2 254 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 ITGB1BP2Q9UKP3 347 aa4.09□□□□□ -1.75
CD44-226ENST00000527889 SMG5Q9UPR3 1016 aaKnown RBP4.09□□□□□ -1.75
CD44-226ENST00000527889 VPS13AQ96RL7 3174 aa4.09□□□□□ -1.76
CD44-226ENST00000527889 FER1L5A0AVI2 2057 aa4.09□□□□□ -1.76
CD44-226ENST00000527889 MPDZO75970 2070 aa4.09□□□□□ -1.76
CD44-226ENST00000527889 FBN3Q75N90 2809 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 A0A096LPK6 155 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ARPC4-TTLL3A0A0A6YYG9 625 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TBC1D3BA6NDS4 549 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 MBD3L4A6NDZ8 208 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 MBD3L3A6NE82 208 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 NPIPB15A6NHN6 443 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 A6NLC8 198 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TMEM233B4DJY2 109 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TCP11X1B4DZS4 312 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 B4E171 279 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 C2CD4DB7Z1M9 353 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 PYCARD-AS1I3L0S3 204 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 PLK4O00444 970 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 KPNA3O00505 521 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 GAPDHSO14556 408 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 PIP5K1BO14986 540 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TSC22D2O75157 780 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 SOCS5O75159 536 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ECI2O75521 394 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 CACNA1HO95180 2353 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 SNX4O95219 450 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ZWINTO95229 277 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 KAT7O95251 611 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 POP4O95707 220 aaKnown RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 KNG1P01042 644 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 APODP05090 189 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ATP5BP06576 529 aaKnown RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 C1SP09871 688 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 SBK3P0C264 359 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 THEGLP0DJG4 465 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 BTF3P20290 206 aaKnown RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 BGNP21810 368 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 DRD4P21917 467 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 KCNA5P22460 613 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TYK2P29597 1187 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 NNMTP40261 264 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 MAGEA12P43365 314 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ITGA1P56199 1179 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TAS2R39P59534 338 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ST8SIA6P61647 398 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ACVR1Q04771 509 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 DLG1Q12959 904 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 PEX6Q13608 980 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 RAB32Q13637 225 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 LAMB3Q13751 1172 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 HABP2Q14520 560 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 USP10Q14694 798 aaKnown RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 EIF4HQ15056 248 aaKnown RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 INAQ16352 499 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 CDKN3Q16667 212 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 UGP2Q16851 508 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 ITPRIPL2Q3MIP1 535 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 SLC44A4Q53GD3 710 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 SETMARQ53H47 684 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 FASTKD1Q53R41 847 aaKnown RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 N4BP2L1Q5TBK1 243 aaPredicted RBP4.08□□□□□ -1.76
CD44-226ENST00000527889 AFTPHQ6ULP2 937 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 SERPINA13PQ6UXR4 307 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 GDPD4Q6W3E5 623 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 TIFABQ6ZNK6 161 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 RFLNAQ6ZTI6 216 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 KIAA0408Q6ZU52 694 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 FAM47EQ6ZV65 393 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 MTSS1LQ765P7 747 aa4.08□□□□□ -1.76
CD44-226ENST00000527889 PIM3Q86V86 326 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms