RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PLA2G4CQ9UP65 541 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ITIH6Q6UXX5 1313 aa6.89□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 TCRBV21S2A2A0A5A6 115 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 SYNCRIPO60506 623 aaKnown RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 RTN2O75298 545 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 GUCY1B2O75343 617 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 TMCC1O94876 653 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 LUC7L3O95232 432 aaKnown RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ADAP00813 363 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 IFNA2P01563 188 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ATP5BP06576 529 aaKnown RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 HOXB2P14652 356 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 POLR2EP19388 210 aaKnown RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 CD70P32970 193 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 TNFSF8P32971 234 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF81P51508 661 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 GSCP56915 257 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF177Q13360 481 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 MAMLD1Q13495 774 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 SIM2Q14190 667 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 NAA25Q14CX7 972 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 CDO1Q16878 200 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 C15orf59Q2T9L4 293 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 PRICKLE4Q2TBC4 344 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 FSCBQ5H9T9 825 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 TMEM215Q68D42 235 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 DCUN1D2Q6PH85 259 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 WDR59Q6PJI9 974 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 LRRC31Q6UY01 552 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 CHST9Q7L1S5 443 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 STRADAQ7RTN6 431 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 BNIPLQ7Z465 357 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ADGRG6Q86SQ4 1221 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ADIPOR2Q86V24 386 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 FAM131BQ86XD5 332 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 VSTM4Q8IW00 320 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 FAM185AQ8N0U4 392 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 NRACQ8N912 160 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 NAXEQ8NCW5 288 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 OR8K1Q8NGG5 319 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 WFDC5Q8TCV5 224 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 FAM172AQ8WUF8 416 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 SORCS1Q8WY21 1168 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 HSPH1Q92598 858 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 CNOT9Q92600 299 aaKnown RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 CENPIQ92674 756 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 IGSF8Q969P0 613 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 C1orf74Q96LT6 269 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 MCEEQ96PE7 176 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 GABRG3Q99928 467 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 CNPY3Q9BT09 278 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 PARVAQ9NVD7 372 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ZNHIT6Q9NWK9 470 aaKnown RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 ELOVL5Q9NYP7 299 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 BCCIPQ9P287 314 aaKnown RBP eCLIP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 THAP10Q9P2Z0 257 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 SLC25A10Q9UBX3 287 aaPredicted RBP6.88□□□□□ -1.31
SDCBP-208ENST00000520228 VANGL2Q9ULK5 521 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 STON1Q9Y6Q2 735 aa6.88□□□□□ -1.31
SDCBP-208ENST00000520228 NUP210Q8TEM1 1887 aaPredicted RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 COL4A2P08572 1712 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 WDR87Q6ZQQ6 2873 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 A0A1B0GVM2 712 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 A0A1W2PQF6 199 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 PRR23AA6NEV1 266 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 A6NLC8 198 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 WASH3PC4AMC7 463 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 TEX22C9J3V5 150 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 I6L893 689 aaPredicted RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 CLDN11O75508 207 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 MOCS3O95396 460 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 CBX6O95503 412 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 PLEKP08567 350 aaPredicted RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 MYBL1P10243 752 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 DESP17661 470 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 HNRNPH3P31942 346 aaKnown RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 CSKP41240 450 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 NR1H2P55055 460 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 HDAC4P56524 1084 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 RPL7AP62424 266 aaKnown RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 GALNT2Q10471 571 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 SRSF5Q13243 272 aaKnown RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF234Q14588 700 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 FUT11Q495W5 492 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 RAB6CQ53S08 254 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF766Q5HY98 468 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 PLEKHA7Q6IQ23 1121 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 CCDC70Q6NSX1 233 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 SCYL2Q6P3W7 929 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 SARM1Q6SZW1 724 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ASCL5Q7RTU5 278 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 DNAAF5Q86Y56 855 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ZDHHC23Q8IYP9 409 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 CCAR2Q8N163 923 aaKnown RBP6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF366Q8N895 744 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 OR4N2Q8NGD1 307 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ST8SIA4Q92187 359 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ZNF653Q96CK0 615 aa6.87□□□□□ -1.31
SDCBP-208ENST00000520228 ERLEC1Q96DZ1 483 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms