RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 SIGLEC12Q96PQ1 595 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 TTC1Q99614 292 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 MIPEPQ99797 713 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 TRIM51Q9BSJ1 452 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 YIPF2Q9BWQ6 316 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 TSSK1BQ9BXA7 367 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 HEMGNQ9BXL5 484 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 SPTLC3Q9NUV7 552 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 COQ3Q9NZJ6 369 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 STOX2Q9P2F5 926 aaPredicted RBP8.89□□□□□ -0.99
NEDD9-211ENST00000508546 NPIPA1Q9UND3 350 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 EFR3BQ9Y2G0 817 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.89□□□□□ -0.99
NEDD9-211ENST00000508546 MRFAP1Q9Y605 127 aa8.89□□□□□ -0.99
NEDD9-211ENST00000508546 A0A1W2PPV9 198 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CCDC162PA2VCL2 907 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 A8MUI8 341 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CDK2AP1O14519 115 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 PRRG2O14669 202 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 FFAR3O14843 346 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 GPR42O15529 346 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 FOXS1O43638 330 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TSPAN12O95859 305 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 APOA4P06727 396 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 ANXA5P08758 320 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 C8orf89P0DMQ9 161 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CD46P15529 392 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 AOAHP28039 575 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CD96P40200 585 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 MARCKSL1P49006 195 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 EFNA3P52797 238 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 EIF3EP60228 445 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TUBA3CQ13748 450 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 FAM53BQ14153 422 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 MEP1AQ16819 746 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 PARP6Q2NL67 630 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CCDC181Q5TID7 509 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TMEM198Q66K66 360 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TUBA3EQ6PEY2 450 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 DARS2Q6PI48 645 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CPEB2Q7Z5Q1 589 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 ZC3H7AQ8IWR0 971 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 ARHGEF39Q8N4T4 335 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 RAB42Q8N4Z0 105 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 AMER2Q8N7J2 671 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 FAM98AQ8NCA5 519 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 LKAAEAR1Q8TD35 194 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 METTL21AQ8WXB1 218 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TRIM44Q96DX7 344 aaPredicted RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 MMABQ96EY8 250 aaPredicted RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 CCDC42Q96M95 316 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 FOXC2Q99958 501 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 UTP23Q9BRU9 249 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 DPH7Q9BTV6 452 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TRIM5Q9C035 493 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 DRC3Q9H069 523 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TSPAN10Q9H1Z9 355 aaPredicted RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 LRRC40Q9H9A6 602 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 KLHL1Q9NR64 748 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 ZNHIT6Q9NWK9 470 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 PPT2Q9UMR5 302 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 RUVBL1Q9Y265 456 aaKnown RBP8.88□□□□□ -0.99
NEDD9-211ENST00000508546 ASB1Q9Y576 335 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 VPS13CQ709C8 3753 aa8.88□□□□□ -0.99
NEDD9-211ENST00000508546 TXNDC9O14530 226 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 PJA2O43164 708 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 VPS26AO75436 327 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 SEC24DO94855 1032 aaPredicted RBP8.87□□□□□ -0.99
NEDD9-211ENST00000508546 C1orf105O95561 183 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 FOSL1P15407 271 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 CMPK1P30085 196 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 PTPN7P35236 360 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 PPARGP37231 505 aaPredicted RBP8.87□□□□□ -0.99
NEDD9-211ENST00000508546 ZNF75DP51815 510 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 RELAQ04206 551 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 TFF3Q07654 80 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 TMED2Q15363 201 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 OR1C1Q15619 314 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 BTBD16Q32M84 506 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 LRRC8BQ6P9F7 803 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 AFTPHQ6ULP2 937 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 GALNTL5Q7Z4T8 443 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 DMRTC2Q8IXT2 367 aaPredicted RBP8.87□□□□□ -0.99
NEDD9-211ENST00000508546 CSNK1A1LQ8N752 337 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 HORMAD2Q8N7B1 307 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 DNAAF3Q8N9W5 541 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 OR13J1Q8NGT2 312 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 ASB5Q8WWX0 329 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 HDAC10Q969S8 669 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 ARSGQ96EG1 525 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 MRFAP1L1Q96HT8 127 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 CYTH2Q99418 400 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 CHP1Q99653 195 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 NPAS2Q99743 824 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 PLCD4Q9BRC7 762 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 HES7Q9BYE0 225 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 VN1R1Q9GZP7 353 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 GOLPH3Q9H4A6 298 aa8.87□□□□□ -0.99
NEDD9-211ENST00000508546 NHEJ1Q9H9Q4 299 aaPredicted RBP8.87□□□□□ -0.99
NEDD9-211ENST00000508546 NPDC1Q9NQX5 325 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms