RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 FAM153AQ9UHL3 310 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 TRHDEQ9UKU6 1024 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 DNPEPQ9ULA0 475 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 EDARQ9UNE0 448 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 MAPRE3Q9UPY8 281 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 KCNK6Q9Y257 313 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ZNF711Q9Y462 761 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 RNF215Q9Y6U7 377 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 MGAQ8IWI9 3026 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 TP53BP1Q12888 1972 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 IGF2RP11717 2491 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 MYLKQ15746 1914 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PRAMEF33A0A0G2JMD5 474 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 A0A1W2PQM1 296 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RHPN2P1A8MT19 583 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 APOC4-APOC2K7ER74 178 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PSMD11O00231 422 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PPM1DO15297 605 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GPR39O43194 453 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PROM1O43490 865 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 BRINP1O60477 761 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 METTL18O95568 372 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 APOC2P02655 101 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RPLP0P05388 317 aaKnown RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 IVLP07476 585 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ZSCAN5DPP0CG00 497 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ACP5P13686 325 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 HGFP14210 728 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ZNF30P17039 623 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ZNF8P17098 575 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 CD1CP29017 333 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ACTR1BP42025 376 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 TNNT3P45378 269 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 PPM1FP49593 454 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 TERF1P54274 439 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ACTR1AP61163 376 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 TUBA4AP68366 448 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 SSBP2P81877 361 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 CCZ1BP86790 482 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 CCZ1P86791 482 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 CCDC173Q0VFZ6 552 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ILF3Q12906 894 aaKnown RBP eCLIP4.45□□□□□ -1.75e-6■■□□□ 11.7
NUP54-206ENST00000508465 HLTFQ14527 1009 aaKnown RBP eCLIP4.45□□□□□ -1.7
NUP54-206ENST00000508465 RPS6KA1Q15418 735 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 SLC1A5Q15758 541 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ISXQ2M1V0 245 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ATP13A5Q4VNC0 1218 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 C14orf28Q4W4Y0 310 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 HENMT1Q5T8I9 393 aaKnown RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 FAM151BQ6UXP7 276 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RANBP10Q6VN20 620 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 SEM1Q6ZVN7 128 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 TMPRSS9Q7Z410 1059 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 AMIGO2Q86SJ2 522 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ADGRG6Q86SQ4 1221 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GALNT13Q8IUC8 556 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 CDKL3Q8IVW4 592 aaPredicted RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 SYCE1Q8N0S2 351 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ARL14Q8N4G2 192 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RNF10Q8N5U6 811 aaKnown RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 ARL10Q8N8L6 244 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 SEMA6DQ8NFY4 1073 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 OR4K2Q8NGD2 314 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GDAP1Q8TB36 358 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PMM1Q92871 262 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RPL36ALQ969Q0 106 aaKnown RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 TBATAQ96M53 351 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 OR2M4Q96R27 311 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 FCRL5Q96RD9 977 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GFM1Q96RP9 751 aaKnown RBP4.45□□□□□ -1.7
NUP54-206ENST00000508465 TMEM121Q9BTD3 319 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GBA3Q9H227 469 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 LRRN3Q9H3W5 708 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GSTO2Q9H4Y5 243 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 GRPEL1Q9HAV7 217 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RDH14Q9HBH5 336 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PRDM8Q9NQV8 689 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 PKD2L2Q9NZM6 624 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 NCKIPSDQ9NZQ3 722 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 IL17CQ9P0M4 197 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 TBC1D29Q9UFV1 150 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ZNF148Q9UQR1 794 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 SLC17A4Q9Y2C5 497 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 DNAJC16Q9Y2G8 782 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ARL5AQ9Y689 179 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 RP1P56715 2156 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 USP24Q9UPU5 2620 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ATMQ13315 3056 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 ZFHX4Q86UP3 3567 aa4.45□□□□□ -1.7
NUP54-206ENST00000508465 KMT2BQ9UMN6 2715 aaPredicted RBP4.44□□□□□ -1.7
NUP54-206ENST00000508465 RGSL1A5PLK6 1076 aa4.44□□□□□ -1.7
NUP54-206ENST00000508465 TMEM8BA6NDV4 472 aa4.44□□□□□ -1.7
NUP54-206ENST00000508465 GOLGA6L9A6NEM1 432 aa4.44□□□□□ -1.7
NUP54-206ENST00000508465 GOLGA6L3A6NEY3 463 aa4.44□□□□□ -1.7
NUP54-206ENST00000508465 C5orf60A6NFR6 353 aa4.44□□□□□ -1.7
NUP54-206ENST00000508465 A8MU76 341 aa4.44□□□□□ -1.7
NUP54-206ENST00000508465 MIF4GDA9UHW6 222 aaKnown RBP4.44□□□□□ -1.7
NUP54-206ENST00000508465 NTN3O00634 580 aaPredicted RBP4.44□□□□□ -1.7
NUP54-206ENST00000508465 GAPDHSO14556 408 aaPredicted RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms