RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SETDB1Q15047 1291 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 PFKFB4Q16877 469 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ZXDCQ2QGD7 858 aaPredicted RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 PTCHD3Q3KNS1 767 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 CCDC153Q494R4 210 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 FBXO48Q5FWF7 155 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 TNFAIP8L3Q5GJ75 292 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 KIAA1614Q5VZ46 1190 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ICE2Q659A1 982 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ARHGAP22Q7Z5H3 698 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 EXOC3L1Q86VI1 746 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 THOC6Q86W42 341 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 FAM20CQ8IXL6 584 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 CARFQ8N187 725 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 FAM26EQ8N5C1 309 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 PTGR2Q8N8N7 351 aaPredicted RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 DCBLD1Q8N8Z6 715 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 BANPQ8N9N5 519 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 CCDC63Q8NA47 563 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 OR2L3Q8NG85 312 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 OR2A1Q8NGT9 310 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 FLVCR1-AS1Q8TAF5 88 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 UBTD2Q8WUN7 234 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 KCNE4Q8WWG9 221 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ESAMQ96AP7 390 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 MIPEPQ99797 713 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 TMEM79Q9BSE2 394 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 HAUS8Q9BT25 410 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 SGPP1Q9BX95 441 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 PITPNM3Q9BZ71 974 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 KLHL25Q9H0H3 589 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ZNF768Q9H5H4 540 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 MRPS30Q9NP92 439 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 INTS7Q9NVH2 962 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 SOHLH2Q9NX45 425 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 PTBP2Q9UKA9 531 aaKnown RBP9.65□□□□□ -0.86
NUP54-203ENST00000504173 EMCNQ9ULC0 261 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 DYRK1BQ9Y463 629 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 ACTL7BQ9Y614 415 aa9.65□□□□□ -0.86
NUP54-203ENST00000504173 COL27A1Q8IZC6 1860 aaPredicted RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 ZFHX3Q15911 3703 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 IGHV5-51A0A0C4DH38 117 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 SLC9B1P1A6NJY1 282 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 HGSO14964 777 aaPredicted RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 MAP3K7O43318 606 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 KLK8O60259 260 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 CCNT2O60583 730 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 PLIN3O60664 434 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 STK16O75716 305 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 SASH3O75995 380 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 ZBTB11O95625 1053 aaPredicted RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 PROCP04070 461 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 ST6GAL1P15907 406 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 MAGP20916 626 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 ELAVL4P26378 380 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 CSTF2P33240 577 aaKnown RBP eCLIP9.64□□□□□ -0.87
NUP54-203ENST00000504173 GGT5P36269 586 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 MLLT3P42568 568 aaPredicted RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 GDF5P43026 501 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 SLC6A12P48065 614 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 AGTR2P50052 363 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 PRDX1Q06830 199 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 NAA25Q14CX7 972 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 C16orf72Q14CZ0 275 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 AGBL2Q5U5Z8 902 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 LCTLQ6UWM7 567 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 LRRC70Q7Z2Q7 622 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 C17orf64Q86WR6 236 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 KMT5CQ86Y97 462 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 KLHDC8AQ8IYD2 350 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 TMEM151AQ8N4L1 468 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 C19orf47Q8N9M1 422 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 SNX31Q8N9S9 440 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 AGBL5Q8NDL9 886 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 GRAMD1AQ96CP6 724 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 PHF21BQ96EK2 531 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 NAF1Q96HR8 494 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 TRAPPC9Q96Q05 1148 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 CMKLR1Q99788 373 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 CD244Q9BZW8 370 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 C12orf65Q9H3J6 166 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 SLC6A20Q9NP91 592 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 DNAJC11Q9NVH1 559 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 SEMA5BQ9P283 1151 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 OPTCQ9UBM4 332 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 MID2Q9UJV3 735 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 SLC22A14Q9Y267 594 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 KLHL20Q9Y2M5 609 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 PLLPQ9Y342 182 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 TNPO3Q9Y5L0 923 aaKnown RBP9.64□□□□□ -0.87
NUP54-203ENST00000504173 CELSR2Q9HCU4 2923 aa9.64□□□□□ -0.87
NUP54-203ENST00000504173 CCDC187A0A096LP49 1063 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 BLACEA4D250 179 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 A8MT66 165 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 TARM1B6A8C7 271 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 STX16-NPEPL1H3BU86 382 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 K7EPI3 171 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 STX16O14662 325 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 KLK10O43240 276 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 TYROBPO43914 113 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms