RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 HIPK4Q8NE63 616 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 OR6C4Q8NGE1 309 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 MTERF3Q96E29 417 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 ZSCAN32Q9NX65 697 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 ZNF282Q9UDV7 671 aaPredicted RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 INVSQ9Y283 1065 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 DGKBQ9Y6T7 804 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 LRRC14BA6NHZ5 514 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 NARSO43776 548 aaKnown RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 DFNA5O60443 496 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 PDYNP01213 254 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 IMPA1P29218 277 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 KCNJ2P63252 427 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 CCINQ13939 588 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 SUZ12Q15022 739 aaKnown RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 RPE65Q16518 533 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 ZNF480Q8WV37 535 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 OR52A5Q9H2C5 316 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 SOHLH2Q9NX45 425 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 WSB2Q9NYS7 404 aaPredicted RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 TAS2R1Q9NYW7 299 aa8.09□□□□□ -1.11
USP54-215ENST00000497106 NUP210Q8TEM1 1887 aaPredicted RBP8.09□□□□□ -1.11
USP54-215ENST00000497106 A0A1W2PPC4 97 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 CD72P21854 359 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 VHLP40337 213 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 DUSP3P51452 185 aaPredicted RBP8.09□□□□□ -1.12
USP54-215ENST00000497106 HK3P52790 923 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 HPCAP84074 193 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 CHRNB3Q05901 458 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 RFTN2Q52LD8 501 aaPredicted RBP8.09□□□□□ -1.12
USP54-215ENST00000497106 LYSMD4Q5XG99 296 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 DCBLD1Q8N8Z6 715 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 OR5AR1Q8NGP9 310 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 TSACCQ96A04 125 aaPredicted RBP8.09□□□□□ -1.12
USP54-215ENST00000497106 TSSK3Q96PN8 268 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 CHRDQ9H2X0 955 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 SDR39U1Q9NRG7 319 aaPredicted RBP8.09□□□□□ -1.12
USP54-215ENST00000497106 THUMPD1Q9NXG2 353 aaKnown RBP8.09□□□□□ -1.12
USP54-215ENST00000497106 PHF11Q9UIL8 331 aa8.09□□□□□ -1.12
USP54-215ENST00000497106 B4DGG1 531 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 H0Y3Z8 333 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 TAPBPO15533 448 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 AKAP10O43572 662 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 COL9A1P20849 921 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 PDHA2P29803 388 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 TIA1P31483 386 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP54-215ENST00000497106 MAGEA8P43361 318 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 RPS9P46781 194 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 STARD6P59095 220 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ZNF763Q0D2J5 394 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ABRAXAS2Q15018 415 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 SZRD1Q7Z422 152 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 TRIM46Q7Z4K8 759 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ZDHHC1Q8WTX9 485 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 PANX1Q96RD7 426 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 CADM1Q9BY67 442 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 SLC24A3Q9HC58 644 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 C8orf4Q9NR00 106 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ZFR2Q9UPR6 939 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 SNX13Q9Y5W8 968 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 K7ESM1 405 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 EEDO75530 441 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 UMPSP11172 480 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 JAK1P23458 1154 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 PKLRP30613 574 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ALDH9A1P49189 494 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 CLDN8P56748 225 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 TXNL4AP83876 142 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 FAM98BQ52LJ0 330 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 RPS27LQ71UM5 84 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 KLHDC8AQ8IYD2 350 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 MTERF1Q99551 399 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 NPAS2Q99743 824 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ZDHHC5Q9C0B5 715 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 USP36Q9P275 1121 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 MCM8Q9UJA3 840 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 RPS6KA6Q9UK32 745 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 CNOT6Q9ULM6 557 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 MED16Q9Y2X0 877 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 A0A1W2PQF6 199 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 TRBC2A0A5B9 178 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 CAPN14A8MX76 684 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 OR7A17O14581 309 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 CAPN5O15484 640 aaPredicted RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 B3GALT2O43825 422 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ADAM23O75077 832 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ACSL1P33121 698 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 CLDN2P57739 230 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 RPS13P62277 151 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 TRA2BP62995 288 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 HMGCS1Q01581 520 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 C2orf80Q0P641 193 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 SLC9A5Q14940 896 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 RCN1Q15293 331 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 GRAMD1BQ3KR37 738 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 TMEM198Q66K66 360 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 C11orf96Q7Z7L8 435 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 IFNEQ86WN2 208 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 C1orf52Q8N6N3 182 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 ADAMTS18Q8TE60 1221 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms