RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-222ENST00000495981 CDC16Q13042 620 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 NME3Q13232 169 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 MTA1Q13330 715 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ZNF177Q13360 481 aaPredicted RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 DNASE1L3Q13609 305 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 CDKN3Q16667 212 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 CYP1B1Q16678 543 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 DEFB133Q30KQ1 61 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 CCDC40Q4G0X9 1142 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 RAB6CQ53S08 254 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ZNF542PQ5EBM4 170 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 BRMS1LQ5PSV4 323 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 SH2D4BQ5SQS7 431 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 FHL5Q5TD97 284 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 KLHL10Q6JEL2 608 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 TCTN3Q6NUS6 607 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ACSM6Q6P461 480 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 MACC1Q6ZN28 852 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 Q6ZSR6 202 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 C11orf57Q6ZUT1 292 aaPredicted RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 EFL1Q7Z2Z2 1120 aaKnown RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 SETD3Q86TU7 594 aaPredicted RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 DTX2Q86UW9 622 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 SLC47A2Q86VL8 602 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 NLRP14Q86W24 1093 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ZFAND4Q86XD8 727 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 PCDH20Q8N6Y1 951 aaKnown RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 PLD5Q8N7P1 536 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 OR6K2Q8NGY2 324 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 MAPK15Q8TD08 544 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 NELFBQ8WX92 580 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ZNF606Q8WXB4 792 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 NCSTNQ92542 709 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 SMARCE1Q969G3 411 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 MIEF2Q96C03 454 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 PDXPQ96GD0 296 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 DHTKD1Q96HY7 919 aaPredicted RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 FAR2Q96K12 515 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ACTRT3Q9BYD9 372 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 TM6SF2Q9BZW4 377 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 TKTL2Q9H0I9 626 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 RAB6CQ9H0N0 254 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 PDCL3Q9H2J4 239 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 SERHL2Q9H4I8 314 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 MRGBPQ9NV56 204 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 DONSONQ9NYP3 566 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 MPP6Q9NZW5 540 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 COX16Q9P0S2 106 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 NKX1-2Q9UD57 310 aaPredicted RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 IL36AQ9UHA7 158 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 ANAPC2Q9UJX6 822 aa4.2□□□□□ -1.74
VPS52-222ENST00000495981 COPG1Q9Y678 874 aaKnown RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 MAP1AP78559 2803 aaPredicted RBP4.2□□□□□ -1.74
VPS52-222ENST00000495981 CXorf51AA0A1B0GTR3 108 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ILVBLA1L0T0 632 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 TSPAN11A1L157 253 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 GTPBP10A4D1E9 387 aaKnown RBP4.19□□□□□ -1.74
VPS52-222ENST00000495981 LMO7DNF2Z398 122 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 UBE2CO00762 179 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 TSPAN4O14817 238 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 AQP9O43315 295 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 FOXS1O43638 330 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ERN1O75460 977 aaKnown RBP4.19□□□□□ -1.74
VPS52-222ENST00000495981 GCATO75600 419 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 SMC2O95347 1197 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ALPPL2P10696 532 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 SFTPCP11686 197 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 PPP3CBP16298 524 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 PON1P27169 355 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 GKP32189 559 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 BSGP35613 385 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ACVRL1P37023 503 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 LIPAP38571 399 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 NNMTP40261 264 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 PSMB10P40306 273 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ETV5P41161 510 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 PPP1R2P41236 205 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 GABRB2P47870 512 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 SULT1E1P49888 294 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 DGKQP52824 942 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 INHBCP55103 352 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 STX17P56962 302 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 UFM1P61960 85 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 HNRNPKP61978 463 aaKnown RBP eCLIP4.19□□□□□ -1.748e-9■□□□□ 9.5
VPS52-222ENST00000495981 RPS21P63220 83 aaKnown RBP4.19□□□□□ -1.74
VPS52-222ENST00000495981 CDK18Q07002 472 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 EPS8Q12929 822 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 CHAF1BQ13112 559 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 IRF4Q15306 451 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 MED22Q15528 200 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ALG11Q2TAA5 492 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 EIF2S3LQ2VIR3 472 aaKnown RBP4.19□□□□□ -1.74
VPS52-222ENST00000495981 SLC25A52Q3SY17 297 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 ACCSLQ4AC99 568 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 SLC9B1Q4ZJI4 515 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 LRRC73Q5JTD7 316 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 MIIPQ5JXC2 388 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 KLHL24Q6TFL4 600 aa4.19□□□□□ -1.74
VPS52-222ENST00000495981 RBM44Q6ZP01 1051 aaKnown RBP4.19□□□□□ -1.74
VPS52-222ENST00000495981 ARHGEF18Q6ZSZ5 1173 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms