RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 C9P02748 559 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 DHRS4L1P0CG22 281 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 BGNP21810 368 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 VARSP26640 1264 aaKnown RBP16.53■□□□□ 0.24
LIME1-208ENST00000493265 GRIA3P42263 894 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 XKR6Q5GH73 641 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 FIGLAQ6QHK4 219 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 WDR48Q8TAF3 677 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 ZNF483Q8TF39 744 aaPredicted RBP16.53■□□□□ 0.24
LIME1-208ENST00000493265 PRAP1Q96NZ9 151 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 DPYSL5Q9BPU6 564 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 SHCBP1LQ9BZQ2 653 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 PRM3Q9NNZ6 103 aa16.53■□□□□ 0.24
LIME1-208ENST00000493265 INTS9Q9NV88 658 aaKnown RBP16.53■□□□□ 0.24
LIME1-208ENST00000493265 PPP6CO00743 305 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 FGF3P11487 239 aaPredicted RBP16.52■□□□□ 0.24
LIME1-208ENST00000493265 GNAZP19086 355 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 EPORP19235 508 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 PIK3CGP48736 1102 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 CCNG1P51959 295 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 ABATP80404 500 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 IRF8Q02556 426 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 CLCQ05315 142 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 CHIT1Q13231 466 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 HES3Q5TGS1 186 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 PLD3Q8IV08 490 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 TRAPPC9Q96Q05 1148 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 CDK15Q96Q40 435 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 CD180Q99467 661 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 CAPS2Q9BXY5 557 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 TWSG1Q9GZX9 223 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 GSTO2Q9H4Y5 243 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 ACTR8Q9H981 624 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 C1GALT1Q9NS00 363 aa16.52■□□□□ 0.24
LIME1-208ENST00000493265 LOC400499M0QZD8 3231 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 IGKV1-8A0A0C4DH67 115 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 FEZF1A0PJY2 475 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 OR7A17O14581 309 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 MT-CO3P00414 261 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 THRAP10827 490 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 MLLT3P42568 568 aaPredicted RBP16.51■□□□□ 0.23
LIME1-208ENST00000493265 CCR8P51685 355 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 INHBCP55103 352 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 KCNAB1Q14722 419 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 ZIC1Q15915 447 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 CLPPQ16740 277 aaPredicted RBP16.51■□□□□ 0.23
LIME1-208ENST00000493265 SOWAHCQ53LP3 525 aaPredicted RBP16.51■□□□□ 0.23
LIME1-208ENST00000493265 FCRL6Q6DN72 434 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 NXPE4Q6UWF7 544 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 TMPRSS7Q7RTY8 843 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 SLITRK4Q8IW52 837 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 ARFGAP2Q8N6H7 521 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 C19orf47Q8N9M1 422 aaKnown RBP16.51■□□□□ 0.23
LIME1-208ENST00000493265 OR52B6Q8NGF0 335 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 C1QTNF3Q9BXJ4 246 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 ZBTB26Q9HCK0 441 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 GPRC5BQ9NZH0 403 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 SNX7Q9UNH6 387 aa16.51■□□□□ 0.23
LIME1-208ENST00000493265 PCM1Q15154 2024 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 HAT1O14929 419 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 MAP3K7O43318 606 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 PRAMEF4O60810 478 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 H2AFYO75367 372 aaKnown RBP16.5■□□□□ 0.23
LIME1-208ENST00000493265 CSO75390 466 aaKnown RBP16.5■□□□□ 0.23
LIME1-208ENST00000493265 ZBTB11O95625 1053 aaPredicted RBP16.5■□□□□ 0.23
LIME1-208ENST00000493265 C1GALT1C1LP0DN25 315 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 CYP4F3Q08477 520 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 DOC2AQ14183 400 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 SLBPQ14493 270 aaKnown RBP eCLIP16.5■□□□□ 0.23
LIME1-208ENST00000493265 DEFB110Q30KQ9 67 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 PRAMEF9Q5VWM5 478 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 FAM219BQ5XKK7 198 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 METTL2BQ6P1Q9 378 aaKnown RBP16.5■□□□□ 0.23
LIME1-208ENST00000493265 SLCO4C1Q6ZQN7 724 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 FRMD7Q6ZUT3 714 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 PRSS42Q7Z5A4 293 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 FAM129CQ86XR2 697 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 FAM76AQ8TAV0 307 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 PRR11Q96HE9 360 aaPredicted RBP16.5■□□□□ 0.23
LIME1-208ENST00000493265 TMEM74Q96NL1 305 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 PLCD4Q9BRC7 762 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 PELI2Q9HAT8 420 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 MID1IP1Q9NPA3 183 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 TMEM184CQ9NVA4 438 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 RNF11Q9Y3C5 154 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 UNC13CQ8NB66 2214 aa16.5■□□□□ 0.23
LIME1-208ENST00000493265 A0A0J9YVX5 310 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 A0A1B0GTL3 188 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 FAM149AA5PLN7 773 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 LYPLA1O75608 230 aaPredicted RBP16.49■□□□□ 0.23
LIME1-208ENST00000493265 FKBP9O95302 570 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 STATHP02808 62 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 SERPINE1P05121 402 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 CDK4P11802 303 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 PDX1P52945 283 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 CSNK1G2P78368 415 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 HSD11B2P80365 405 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 LCP2Q13094 533 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 STX3Q13277 289 aa16.49■□□□□ 0.23
LIME1-208ENST00000493265 RBBP5Q15291 538 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms