RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 BRF2Q9HAW0 419 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 MRPS30Q9NP92 439 aaKnown RBP20.84■□□□□ 0.93
SMC4-221ENST00000489573 C1orf109Q9NX04 203 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 RAPGEFL1Q9UHV5 662 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 TSC22D4Q9Y3Q8 395 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 PSMD12O00232 456 aaPredicted RBP20.83■□□□□ 0.92
SMC4-221ENST00000489573 CMPK1P30085 196 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 MRPL19P49406 292 aaKnown RBP20.83■□□□□ 0.92
SMC4-221ENST00000489573 DIO3P55073 304 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 PHEXP78562 749 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 BNC1Q01954 994 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 KIR2DS3Q14952 304 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 HERC3Q15034 1050 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 RPS6KA2Q15349 733 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 TMIGD1Q6UXZ0 262 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 SYT12Q8IV01 421 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 MIER2Q8N344 545 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 RNF175Q8N4F7 328 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 OR2L3Q8NG85 312 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 OR4K1Q8NGD4 311 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 PIGKQ92643 395 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 CMTM7Q96FZ5 175 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 PITHD1Q9GZP4 211 aaPredicted RBP20.83■□□□□ 0.92
SMC4-221ENST00000489573 PRM3Q9NNZ6 103 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 NOP53Q9NZM5 478 aaKnown RBP20.83■□□□□ 0.92
SMC4-221ENST00000489573 GPR45Q9Y5Y3 372 aa20.83■□□□□ 0.92
SMC4-221ENST00000489573 ARHGEF17Q96PE2 2063 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 ANKRD65E5RJM6 399 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 H7BY64 318 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 SEC22BO75396 215 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 SP9P0CG40 484 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 COX4I1P13073 169 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 RASSF2P50749 326 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 MAZP56270 477 aaKnown RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 SF1Q15637 639 aaKnown RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 DEFB133Q30KQ1 61 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 RFTN2Q52LD8 501 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 PEAR1Q5VY43 1037 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 ADNP2Q6IQ32 1131 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 POU5F2Q8N7G0 328 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 ZNF740Q8NDX6 193 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 PRAP1Q96NZ9 151 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 ELF4Q99607 663 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 BRINP2Q9C0B6 783 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 SDR39U1Q9NRG7 319 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 UCKL1Q9NWZ5 548 aa20.82■□□□□ 0.92
SMC4-221ENST00000489573 POLR3HQ9Y535 204 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 TP53BP1Q12888 1972 aaPredicted RBP20.82■□□□□ 0.92
SMC4-221ENST00000489573 OR6C74A6NCV1 312 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 MAGEB17A8MXT2 336 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 FOXE1O00358 373 aaPredicted RBP20.81■□□□□ 0.92
SMC4-221ENST00000489573 NOBOXO60393 691 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 THRAP10827 490 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 GPX3P22352 226 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 FASLGP48023 281 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 CPA2P48052 419 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 CSNK1G2P78368 415 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 GRIK2Q13002 908 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 RBBP5Q15291 538 aaKnown RBP20.81■□□□□ 0.92
SMC4-221ENST00000489573 ZNF423Q2M1K9 1284 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 PDCD4Q53EL6 469 aaKnown RBP20.81■□□□□ 0.92
SMC4-221ENST00000489573 AGKQ53H12 422 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 IL23RQ5VWK5 629 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 ADCK2Q7Z695 626 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 SNX32Q86XE0 403 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 ARL14Q8N4G2 192 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 ZBTB44Q8NCP5 570 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 RP9Q8TA86 221 aaKnown RBP20.81■□□□□ 0.92
SMC4-221ENST00000489573 NT5DC2Q9H857 520 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 SLC6A20Q9NP91 592 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 DMRT3Q9NQL9 472 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 ASIC5Q9NY37 505 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 VPS29Q9UBQ0 182 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 EIF3LQ9Y262 564 aaKnown RBP20.81■□□□□ 0.92
SMC4-221ENST00000489573 CSNK1G3Q9Y6M4 447 aa20.81■□□□□ 0.92
SMC4-221ENST00000489573 TDRD6O60522 2096 aaKnown RBP20.81■□□□□ 0.92
SMC4-221ENST00000489573 IGKV1-8A0A0C4DH67 115 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 EZRP15311 586 aaKnown RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 HRH2P25021 359 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 HOXD12P35452 270 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 PIK3CBP42338 1070 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 RXRGP48443 463 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 ARRB1P49407 418 aaPredicted RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 ACADVLP49748 655 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 RPS13P62277 151 aaKnown RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 ANGPT1Q15389 498 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 MAPRE2Q15555 327 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 PAOXQ6QHF9 649 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 C17orf82Q86X59 251 aaPredicted RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 OR10G6Q8NH81 332 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 SLC7A6OSQ96CW6 309 aaPredicted RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 TMEM184CQ9NVA4 438 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 ADGRE2Q9UHX3 823 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 ENTPD2Q9Y5L3 495 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 LOC100653049A0A140TA62 436 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 KRT34O76011 436 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 POLR2CP19387 275 aaPredicted RBP20.8■□□□□ 0.92
SMC4-221ENST00000489573 DPP6P42658 865 aa20.8■□□□□ 0.92
SMC4-221ENST00000489573 MNAT1P51948 309 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms