RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CCR3P51677 355 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 PLEKHS1Q5SXH7 462 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 IGFN1Q86VF2 1251 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 TMCO5AQ8N6Q1 288 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 TTC29Q8NA56 475 aaPredicted RBP17.38■□□□□ 0.37
VIM-206ENST00000487938 RORBQ92753 470 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 SH3KBP1Q96B97 665 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 HSH2DQ96JZ2 352 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 ZNF641Q96N77 438 aaPredicted RBP17.38■□□□□ 0.37
VIM-206ENST00000487938 RASSF1Q9NS23 344 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 PCDH10Q9P2E7 1040 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 VPS29Q9UBQ0 182 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 COQ6Q9Y2Z9 468 aa17.38■□□□□ 0.37
VIM-206ENST00000487938 SAMHD1Q9Y3Z3 626 aaKnown RBP17.38■□□□□ 0.37
VIM-206ENST00000487938 OBSL1O75147 1896 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 CBFA2T3O75081 653 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 POP4O95707 220 aaKnown RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 FUCA1P04066 466 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 GPX2P18283 190 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 DNAJA1P31689 397 aaKnown RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 SRSF11Q05519 484 aaKnown RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 CCSMST1Q4G0I0 132 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 THOC6Q86W42 341 aaKnown RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 TMEM25Q86YD3 366 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 ELMOD1Q8N336 334 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 SETD9Q8NE22 299 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 ZNF566Q969W8 418 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 MED8Q96G25 268 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 HERC2P3Q9BVR0 1158 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 CCL26Q9Y258 94 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 HS3ST2Q9Y278 367 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 PCDHGA10Q9Y5H3 936 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 MKI67P46013 3256 aaKnown RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 HOXA9P31269 272 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 SLC7A9P82251 487 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 DOC2AQ14183 400 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 Q6ZVL8 140 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 HSD11B1LQ7Z5J1 315 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 ATG16L2Q8NAA4 619 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 ZNF540Q8NDQ6 660 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 SH3YL1Q96HL8 342 aaPredicted RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 SLC46A2Q9BY10 475 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 CPEB1Q9BZB8 566 aaKnown RBP17.37■□□□□ 0.37
VIM-206ENST00000487938 GABARAPL1Q9H0R8 117 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 RPS6KA6Q9UK32 745 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 ZNF510Q9Y2H8 683 aa17.37■□□□□ 0.37
VIM-206ENST00000487938 M0QX08 132 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SGTAO43765 313 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 FKTNO75072 461 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ETHE1O95571 254 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SEMG1P04279 462 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 AQP1P29972 269 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 IDUAP35475 653 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 NAE1Q13564 534 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 DGCR6Q14129 220 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ARHGEF6Q15052 776 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 CAPN13Q6MZZ7 669 aaPredicted RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 SLCO6A1Q86UG4 719 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 HOMEZQ8IX15 550 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 LILRA3Q8N6C8 439 aaPredicted RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 WDR20Q8TBZ3 569 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SIRT5Q9NXA8 310 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 KIF17Q9P2E2 1029 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SLC25A13Q9UJS0 675 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 TPRKBQ9Y3C4 175 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SLC16A5O15375 505 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 TGM5O43548 720 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SULT1C4O75897 302 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 FADS2O95864 444 aaKnown RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 NTRK1P04629 796 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 FPR1P21462 350 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ETV3P41162 512 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 CASP9P55211 416 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 AP1S2P56377 157 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 VBP1P61758 197 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SLC35A2P78381 396 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 GSTM4Q03013 218 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SP140Q13342 867 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ADPRMQ3LIE5 342 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 LIPJQ5W064 366 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 GDPD4Q6W3E5 623 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 MSANTD1Q6ZTZ1 278 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 CBLL1Q75N03 491 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 EIF3MQ7L2H7 374 aaKnown RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 NDNFQ8TB73 568 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ZNF296Q8WUU4 475 aaPredicted RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 POP5Q969H6 163 aaKnown RBP17.36■□□□□ 0.37
VIM-206ENST00000487938 MAL2Q969L2 176 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 TBC1D20Q96BZ9 403 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 FAM83DQ9H4H8 585 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 DUSP21Q9H596 190 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ARMC7Q9H6L4 198 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 TPT1P8Q9HAU6 139 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 KRT84Q9NSB2 600 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 SCN3BQ9NY72 215 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 ERGIC3Q9Y282 383 aa17.36■□□□□ 0.37
VIM-206ENST00000487938 MICAL3Q7RTP6 2002 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 TRAV19A0A0A6YYK7 116 aa17.35■□□□□ 0.37
VIM-206ENST00000487938 FUOMA2VDF0 154 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms