RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PHLDA1Q8WV24 401 aaPredicted RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 SSMEM1Q8WWF3 244 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ATL1Q8WXF7 558 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 NXNL1Q96CM4 212 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ARSGQ96EG1 525 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 C16orf45Q96MC5 204 aaPredicted RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 SFXN2Q96NB2 322 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 SEPHS2Q99611 448 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ANKZF1Q9H8Y5 726 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 FGF21Q9NSA1 209 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 OLAHQ9NV23 265 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 RAI14Q9P0K7 980 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 HOOK1Q9UJC3 728 aaKnown RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 CPSF1Q10570 1443 aaKnown RBP5.29□□□□□ -1.56
USP40-213ENST00000483216 AKAP12Q02952 1782 aa5.29□□□□□ -1.56
USP40-213ENST00000483216 ITSN1Q15811 1721 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 A0A087WUV0 522 aaPredicted RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 SYNDIG1LA6NDD5 238 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 MEIS2O14770 477 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 KLF11O14901 512 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 HMBSP08397 361 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 HSPA8P11142 646 aaKnown RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 CASTP20810 708 aaKnown RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 MTHFRP42898 656 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 HERV-K104P61576 105 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 MAT1AQ00266 395 aaKnown RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 IL11RAQ14626 422 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 KRTAP27-1Q3LI81 207 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 SYT14P1Q58G82 188 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 GBP6Q6ZN66 633 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 PLA2G4DQ86XP0 818 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 MARVELD2Q8N4S9 558 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 GMPPAQ96IJ6 420 aaPredicted RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 PLEKHF1Q96S99 279 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 BPIFA3Q9BQP9 254 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 NUP85Q9BW27 656 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 PITPNM3Q9BZ71 974 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 TMX4Q9H1E5 349 aaPredicted RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 FGF22Q9HCT0 170 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 Q9N2K0 584 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 PRMT7Q9NVM4 692 aaPredicted RBP5.28□□□□□ -1.56
USP40-213ENST00000483216 CACNG4Q9UBN1 327 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 TRIM17Q9Y577 477 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 ADGRL3Q9HAR2 1447 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 PLEKHG1Q9ULL1 1385 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 SLIT1O75093 1534 aa5.28□□□□□ -1.56
USP40-213ENST00000483216 MAP2P11137 1827 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 CDK12Q9NYV4 1490 aaPredicted RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 ARHGAP23Q9P227 1491 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 IGHV4-4A0A075B6R2 117 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 A0A087WW49 117 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 MEIOCA2RUB1 952 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ANKRD61A6NGH8 418 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ERICH4A6NGS2 130 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 TRUB2O95900 331 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 ZNF853P0CG23 659 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 AKR1B1P15121 316 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 CEBPBP17676 345 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 IL11P20809 199 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 MAGEA11P43364 429 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 TDO2P48775 406 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 CCR3P51677 355 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 KRTAP10-7P60409 375 aaPredicted RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 HNRNPKP61978 463 aaKnown RBP eCLIP5.27□□□□□ -1.57
USP40-213ENST00000483216 SARNPP82979 210 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 SNTB1Q13884 538 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 C14orf177Q52M58 125 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 PHLDA2Q53GA4 152 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ZC2HC1BQ5TFG8 222 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 PSRC1Q6PGN9 363 aaPredicted RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 CCDC73Q6ZRK6 1079 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 RBM43Q6ZSC3 357 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 ADAMTS13Q76LX8 1427 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 KIAA1328Q86T90 577 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 LUZP1Q86V48 1076 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 CCDC83Q8IWF9 413 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 CCAR2Q8N163 923 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 TC2NQ8N9U0 490 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 POGLUT1Q8NBL1 392 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 OR2T11Q8NH01 316 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 MRGPRDQ8TDS7 321 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 RPGRIP1Q96KN7 1286 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ZNF396Q96N95 335 aaPredicted RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 RAD9AQ99638 391 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 FUCA2Q9BTY2 467 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 GPR88Q9GZN0 384 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 WDR13Q9H1Z4 485 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ALDH8A1Q9H2A2 487 aaPredicted RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 NOL11Q9H8H0 719 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 VIPAS39Q9H9C1 493 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 PIH1D3Q9NQM4 214 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 GKN1Q9NS71 199 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ATAD3AQ9NVI7 634 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 DAPK2Q9UIK4 370 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 ABT1Q9ULW3 272 aaKnown RBP5.27□□□□□ -1.57
USP40-213ENST00000483216 PADI2Q9Y2J8 665 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 PYGO1Q9Y3Y4 419 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 TRPV2Q9Y5S1 764 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 TOPAZ1Q8N9V7 1692 aa5.27□□□□□ -1.57
USP40-213ENST00000483216 LRRC7Q96NW7 1537 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms