RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CCNB2O95067 398 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 CCNDBP1O95273 360 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ALPLP05186 524 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 CSTF2P33240 577 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP42-206ENST00000479544 MANFP55145 182 aaKnown RBP13.15□□□□□ -0.3
USP42-206ENST00000479544 HNRNPA0Q13151 305 aaKnown RBP13.15□□□□□ -0.3
USP42-206ENST00000479544 AAK1Q2M2I8 961 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ADPRMQ3LIE5 342 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 IFI44LQ53G44 452 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ZFAND4Q86XD8 727 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 R3HDMLQ9H3Y0 253 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 NECTIN3Q9NQS3 549 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 EIF3KQ9UBQ5 218 aaKnown RBP13.15□□□□□ -0.3
USP42-206ENST00000479544 KCNH4Q9UQ05 1017 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 CAPNS1P04632 268 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 CLTBP09497 229 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 BCKDHAP12694 445 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 NKX3-2P78367 333 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 IL10RBQ08334 325 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 STX4Q12846 297 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 ZMYND11Q15326 602 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 INAVAQ3KP66 663 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 PARP15Q460N3 678 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 BCL7AQ4VC05 210 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 STEAP3Q658P3 488 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 TMEM151AQ8N4L1 468 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 SLC37A3Q8NCC5 494 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 AP3S1Q92572 193 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 COL21A1Q96P44 957 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 DERL2Q9GZP9 239 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 POLR2J3Q9H1A7 115 aaKnown RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 TMEM138Q9NPI0 162 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 DNAJC11Q9NVH1 559 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 MAPRE3Q9UPY8 281 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 KCNE2Q9Y6J6 123 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 TLX2O43763 284 aaPredicted RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 CA5AP35218 305 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 PTGER3P43115 390 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 ABHD18Q0P651 414 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 C10orf62Q5T681 223 aaPredicted RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 CCDC28AQ8IWP9 274 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 AQP11Q8NBQ7 271 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 OR6Q1Q8NGQ2 317 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 SMG7Q92540 1137 aaKnown RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 INPP5KQ9BT40 448 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 C1QTNF1Q9BXJ1 281 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 INIPQ9NRY2 104 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 SMIM35A0A1B0GVV1 85 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 ZNF487B1APH4 448 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 KPNA3O00505 521 aaPredicted RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 C7P10643 843 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 TCF3P15923 654 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 GGT1P19440 569 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 AFF1P51825 1210 aaKnown RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 BNC1Q01954 994 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 GPAT3Q53EU6 434 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 IDNKQ5T6J7 187 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 CDC73Q6P1J9 531 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 MFSD6LQ8IWD5 586 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 TCEANCQ8N8B7 351 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 MCMBPQ9BTE3 642 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 ZSCAN5AQ9BUG6 496 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 CCSER2Q9H7U1 834 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 CCDC177Q9NQR7 707 aaPredicted RBP13.14□□□□□ -0.31
USP42-206ENST00000479544 CD300AQ9UGN4 299 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 DNMT3LQ9UJW3 386 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 GPR45Q9Y5Y3 372 aa13.14□□□□□ -0.31
USP42-206ENST00000479544 FAM92AA1XBS5 289 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ORC5O43913 435 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 OR2B3O76000 313 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 RPL17P18621 184 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 SERPINA4P29622 427 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 KDELR2P33947 212 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 YBEYP58557 167 aaPredicted RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 RACK1P63244 317 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 CREMQ03060 361 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 SF1Q15637 639 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 DCST1Q5T197 706 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MZT2AQ6P582 158 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 C10orf53Q8N6V4 93 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PROKR1Q8TCW9 393 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 KCTD13Q8WZ19 329 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 FUBP1Q96AE4 644 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 NLKQ9UBE8 527 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 UTS2RQ9UKP6 389 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MEN1O00255 615 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PIRO00625 290 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 ACLYP53396 1101 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 MRPS6P82932 125 aaKnown RBP13.13□□□□□ -0.31
USP42-206ENST00000479544 ZNF45Q02386 682 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 TUSC3Q13454 348 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 RCAN2Q14206 197 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 E2F2Q14209 437 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PTPRRQ15256 657 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 PCBP2Q15366 365 aaKnown RBP eCLIP13.13□□□□□ -0.311e-8■■□□□ 14.3
USP42-206ENST00000479544 HECTD3Q5T447 861 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 KIAA1161Q6NSJ0 714 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 SMARCD3Q6STE5 483 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 NRARPQ7Z6K4 114 aa13.13□□□□□ -0.31
USP42-206ENST00000479544 RHOXF1Q8NHV9 184 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms