RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LMNTD2Q8IXW0 634 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 CPNE9Q8IYJ1 553 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 AMER3Q8N944 861 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 C8orf44Q96CB5 159 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 AGAP4Q96P64 663 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 OSBPL9Q96SU4 736 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 NAP1L3Q99457 506 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 LHPPQ9H008 270 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 CCDC68Q9H2F9 335 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 CUEDC1Q9NWM3 386 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 NOVA2Q9UNW9 492 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 MAD1L1Q9Y6D9 718 aa17.89■□□□□ 0.45
CCDC88B-206ENST00000473405 ZNF839A8K0R7 811 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 FFAR3O14843 346 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 HAT1O14929 419 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 GPR42O15529 346 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 P2RX6O15547 441 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 HAUS5O94927 633 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 CCNDBP1O95273 360 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 SYF2O95926 243 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 HPP00738 406 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 ACPPP15309 386 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 IMPA1P29218 277 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 CARSP49589 748 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 SNRPNP63162 240 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 TIAL1Q01085 375 aaKnown RBP eCLIP17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 OCA2Q04671 838 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 HSP90AA5PQ58FG0 334 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 RNASEH2BQ5TBB1 312 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 ATG9BQ674R7 924 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 HIST2H2BCQ6DN03 193 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 PPIL6Q8IXY8 311 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 ACTRT1Q8TDG2 376 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 MVB12AQ96EY5 273 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 ZNF160Q9HCG1 818 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 PLEKHB1Q9UF11 243 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 PCYOX1Q9UHG3 505 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 C3orf18Q9UK00 162 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 COMMD10Q9Y6G5 202 aa17.88■□□□□ 0.45
CCDC88B-206ENST00000473405 SVILO95425 2214 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 A0A1W2PQ72 361 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 SLC26A3P40879 764 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 ABATP80404 500 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 RELAQ04206 551 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 CRYMQ14894 314 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 SLC35F6Q8N357 371 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 PRR7Q8TB68 274 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 CALML6Q8TD86 181 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 GRK7Q8WTQ7 553 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 THOC3Q96J01 351 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 FAM167BQ9BTA0 163 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 AARSD1Q9BTE6 412 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 TRPC4Q9UBN4 977 aa17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 COPG1Q9Y678 874 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-206ENST00000473405 IDSB3KWA1 339 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 EIF3FO00303 357 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 MAP2K7O14733 419 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 FOXS1O43638 330 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 COX6A1P12074 109 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 EFNA3P52797 238 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 IRAK1BP1Q5VVH5 260 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 GARNL3Q5VVW2 1013 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 UBE2R2Q712K3 238 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 KCNMB4Q86W47 210 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 PLD3Q8IV08 490 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 RERGQ96A58 199 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 VPS50Q96JG6 964 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 NDNQ99608 321 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 DRC3Q9H069 523 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 IARS2Q9NSE4 1012 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 ABCF3Q9NUQ8 709 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 C14orf105Q9NVL8 296 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 ERRFI1Q9UJM3 462 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 ADAMTS6Q9UKP5 1117 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 SNX12Q9UMY4 172 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 CDC14AQ9UNH5 594 aa17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 MRPS2Q9Y399 296 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-206ENST00000473405 ZBTB14O43829 449 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 BANF1O75531 89 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 PGAM1P18669 254 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 GLRBP48167 497 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 TBPL1P62380 186 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 MSS51Q4VC12 460 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 ADCK2Q7Z695 626 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 C2CD4AQ8NCU7 369 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 MMABQ96EY8 250 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 TGIF2Q9GZN2 237 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 UTP6Q9NYH9 597 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 SH2B3Q9UQQ2 575 aa17.85■□□□□ 0.45
CCDC88B-206ENST00000473405 A0A0A6YYC8 382 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 GOLGA6L10A0A0M3HER8 536 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 ANKUB1A6NFN9 424 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 H7BY64 318 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 I3L1I5 382 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 CES2O00748 559 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 PRPF4O43172 522 aaKnown RBP eCLIP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 KLHL18O94889 574 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 STATHP02808 62 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 GABRB3P28472 473 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms