RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 HKDC1Q2TB90 917 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 PRTGQ2VWP7 1150 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 RBM20Q5T481 1227 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 ZNF425Q6IV72 752 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 PRMT9Q6P2P2 845 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 PLD3Q8IV08 490 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 IGDCC3Q8IVU1 814 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 STT3BQ8TCJ2 826 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 RERGQ96A58 199 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 PNPLA2Q96AD5 504 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 C19orf60Q96EN9 201 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 CERS2Q96G23 380 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 CFAP36Q96G28 342 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 PWWP2AQ96N64 755 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 CRB3Q9BUF7 120 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 YIPF2Q9BWQ6 316 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 ZNF552Q9H707 407 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 PPANQ9NQ55 473 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 TAS2R13Q9NYV9 303 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 C5AR2Q9P296 337 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 CHMP2BQ9UQN3 213 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 RUVBL1Q9Y265 456 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 HIVEP3Q5T1R4 2406 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 SPTBN1Q01082 2364 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 NBPF19A0A087WUL8 3843 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 VSTM2BA6NLU5 285 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 EIF3FO00303 357 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 FFAR3O14843 346 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 HAT1O14929 419 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 GPR42O15529 346 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 EZRP15311 586 aaKnown RBP14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 IVDP26440 423 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 GABRB3P28472 473 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 RGS4P49798 205 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 ABATP80404 500 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 TIAL1Q01085 375 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 KLC1Q07866 573 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 TUBB8Q3ZCM7 444 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 PRAMEF13Q5VWM6 474 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 KIRREL2Q6UWL6 708 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 MBOAT1Q6ZNC8 495 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 LRRC56Q8IYG6 542 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 PRR7Q8TB68 274 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 EEF1AKMT1Q8WVE0 214 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 MIEF2Q96C03 454 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 TRIM51Q9BSJ1 452 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 NAT9Q9BTE0 207 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 CCDC177Q9NQR7 707 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 SEMA3GQ9NS98 782 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 ZNF282Q9UDV7 671 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 ADAMTS6Q9UKP5 1117 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 ICE1Q9Y2F5 2266 aa14.97□□□□□ -0.01
CCDC88B-205ENST00000472524 ZGRF1Q86YA3 2104 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 H7BY64 318 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 P2RX6O15547 441 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 KLHL41O60662 606 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 IPO13O94829 963 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 STATHP02808 62 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 ZGLP1P0C6A0 271 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 ELK3P41970 407 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 CDKN2DP55273 166 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 TBPL1P62380 186 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 DR1Q01658 176 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 MORF4L2Q15014 288 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PLEKHN1Q494U1 663 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 VWA2Q5GFL6 755 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 LRRC8EQ6NSJ5 796 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PAQR3Q6TCH7 311 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 CREG2Q8IUH2 290 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 CNTN4Q8IWV2 1026 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PARP9Q8IXQ6 854 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PALM2Q8IXS6 379 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PDIK1LQ8N165 341 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 MYO1HQ8N1T3 1032 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 MCOLN3Q8TDD5 553 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 ANP32BQ92688 251 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 NACC2Q96BF6 587 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 ALKBH8Q96BT7 664 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 MMABQ96EY8 250 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 LINGO1Q96FE5 620 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PRAP1Q96NZ9 151 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 OR2A5Q96R48 311 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 NAPGQ99747 312 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 MESP1Q9BRJ9 268 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 TRIM31Q9BZY9 425 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 ZBTB20Q9HC78 741 aaPredicted RBP14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 C3orf18Q9UK00 162 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 CDC14AQ9UNH5 594 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 PDE10AQ9Y233 779 aa14.96□□□□□ -0.01
CCDC88B-205ENST00000472524 TTI1O43156 1089 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 PRPF4O43172 522 aaKnown RBP eCLIP14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 AHSGP02765 367 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 C8GP07360 202 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 ANXA5P08758 320 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 PGGT1BP53609 377 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 EMP3P54852 163 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 SOX8P57073 446 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 NR6A1Q15406 480 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 TEDDM1Q5T9Z0 273 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 IRAK1BP1Q5VVH5 260 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms