RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ROPN1LQ96C74 230 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 CXorf40BQ96DE9 158 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 SPDL1Q96EA4 605 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 TEX37Q96LM6 180 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 MTERF1Q99551 399 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 ZBTB18Q99592 522 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 TWSG1Q9GZX9 223 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 NT5DC2Q9H857 520 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 WDR41Q9HAD4 459 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 DMRT3Q9NQL9 472 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 NMRK1Q9NWW6 199 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 OR6C2Q9NZP2 312 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 DLGAP2Q9P1A6 1054 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 ZNF624Q9P2J8 865 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 VPS29Q9UBQ0 182 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 SLC7A8Q9UHI5 535 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 ADGRE2Q9UHX3 823 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 PRDM4Q9UKN5 801 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 PCDHB11Q9Y5F2 797 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 SLCO1B1Q9Y6L6 691 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 EML5Q05BV3 1969 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 VCANP13611 3396 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 KIR2DS5A0A0G2JLQ3 304 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 A0A0G2JNG1 304 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 FAM221BA6H8Z2 402 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 CCDC154A6NI56 674 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 OR5K4A6NMS3 321 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 A8MUI8 341 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 MAGEB17A8MXT2 336 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 KIR2DS3K7RE56 304 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PRMT3O60678 531 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 CIB2O75838 187 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 WNT1P04628 370 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 NME1P15531 152 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 AMD1P17707 334 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 SDC1P18827 310 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PSMB5P28074 263 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 IL12AP29459 219 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 CLNS1AP54105 237 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 MTTPP55157 894 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 C21orf58P58505 322 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PSME3P61289 254 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PRDX1Q06830 199 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 FOXM1Q08050 763 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 ACSM2AQ08AH3 577 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 SIGLEC14Q08ET2 396 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 DDX39BQ13838 428 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 PTGR1Q14914 329 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 KIR2DS5Q14953 304 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 ZNF423Q2M1K9 1284 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 TRMT5Q32P41 509 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 VPS26BQ4G0F5 336 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 TIGD2Q4W5G0 525 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 C6orf163Q5TEZ5 329 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 FBXW10Q5XX13 1052 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 ACSM2BQ68CK6 577 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 ADNP2Q6IQ32 1131 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 NOXRED1Q6NXP6 359 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PRMT9Q6P2P2 845 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 IYDQ6PHW0 289 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 TMIGD1Q6UXZ0 262 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 RETREG3Q86VR2 466 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 AMIGO1Q86WK6 493 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 C2orf73Q8N5S3 287 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 OR4K1Q8NGD4 311 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 LCN9Q8WX39 176 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 C11orf24Q96F05 449 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 APIPQ96GX9 242 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 HSPA12BQ96MM6 686 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 SERPINI1Q99574 410 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 NRTNQ99748 197 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 AIF1LQ9BQI0 150 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 LRRC61Q9BV99 259 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 ACAT2Q9BWD1 397 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 RASSF4Q9H2L5 321 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 SPNS1Q9H2V7 528 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 RHBGQ9H310 441 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 TCEAL2Q9H3H9 227 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 DENND2DQ9H6A0 471 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 XKR8Q9H6D3 395 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 TM9SF3Q9HD45 589 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 CD320Q9NPF0 282 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PRMT8Q9NR22 394 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 CUEDC1Q9NWM3 386 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 SIRT5Q9NXA8 310 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 TAAR2Q9P1P5 351 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 APOBEC3BQ9UH17 382 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 KLF15Q9UIH9 416 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 LEF1Q9UJU2 399 aaPredicted RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 RUVBL1Q9Y265 456 aaKnown RBP9.03□□□□□ -0.96
VPS52-216ENST00000471309 DLGAP4Q9Y2H0 992 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 FANCMQ8IYD8 2048 aa9.03□□□□□ -0.96
VPS52-216ENST00000471309 PRAMEF33A0A0G2JMD5 474 aa9.02□□□□□ -0.97
VPS52-216ENST00000471309 ASPDHA6ND91 283 aa9.02□□□□□ -0.97
VPS52-216ENST00000471309 C9JVG2 144 aa9.02□□□□□ -0.97
VPS52-216ENST00000471309 FXYD1O00168 92 aa9.02□□□□□ -0.97
VPS52-216ENST00000471309 TLR4O00206 839 aa9.02□□□□□ -0.97
VPS52-216ENST00000471309 CFLARO15519 480 aa9.02□□□□□ -0.97
VPS52-216ENST00000471309 MAP3K13O43283 966 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms