RNA–Protein interactions for RNA: ENST00000470621.1

SSB-209, Transcript of Sjogren syndrome antigen B, human

TSL 3

Gene SSB, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSB-209	ENST00000470621	TEX28	O15482	410 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	DCX	O43602	365 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	RPS6KA5	O75582	802 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	DLK1	P80370	383 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	NECTIN1	Q15223	517 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	PTGIS	Q16647	500 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	FASTKD1	Q53R41	847 aa	Known RBP	4.62	□□□□□ -1.67
SSB-209	ENST00000470621	SUSD4	Q5VX71	490 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	OR4C11	Q6IEV9	310 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	NOA1	Q8NC60	698 aa	Known RBP	4.62	□□□□□ -1.67
SSB-209	ENST00000470621	MAPK15	Q8TD08	544 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	ZNRF4	Q8WWF5	429 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	SLCO2A1	Q92959	643 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	ERP27	Q96DN0	273 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	CNDP2	Q96KP4	475 aa	Known RBP	4.62	□□□□□ -1.67
SSB-209	ENST00000470621	FER1L6-AS2	Q96M78	137 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	KLHL5	Q96PQ7	755 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	SPAG5	Q96R06	1193 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	ZNF300	Q96RE9	604 aa	Predicted RBP	4.62	□□□□□ -1.67
SSB-209	ENST00000470621	NKX3-1	Q99801	234 aa	Predicted RBP	4.62	□□□□□ -1.67
SSB-209	ENST00000470621	PI4K2A	Q9BTU6	479 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	SLC25A23	Q9BV35	468 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	XAB2	Q9HCS7	855 aa	Known RBP	4.62	□□□□□ -1.67
SSB-209	ENST00000470621	PRSS21	Q9Y6M0	314 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	HEG1	Q9ULI3	1381 aa		4.62	□□□□□ -1.67
SSB-209	ENST00000470621	TRBV4-1	A0A0J9YWV2	114 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	SERPING1	P05155	500 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	ERCC2	P18074	760 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	RPL35A	P18077	110 aa	Known RBP	4.61	□□□□□ -1.67
SSB-209	ENST00000470621	KRTAP5-9	P26371	169 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	EEF1D	P29692	281 aa	Known RBP	4.61	□□□□□ -1.67
SSB-209	ENST00000470621	MYL7	Q01449	175 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	ENPP2	Q13822	863 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	TMEM132D	Q14C87	1099 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	EFTUD2	Q15029	972 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
SSB-209	ENST00000470621	CTR9	Q6PD62	1173 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	STXBP4	Q6ZWJ1	553 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	RYBP	Q8N488	228 aa	Predicted RBP	4.61	□□□□□ -1.67
SSB-209	ENST00000470621	TSACC	Q96A04	125 aa	Predicted RBP	4.61	□□□□□ -1.67
SSB-209	ENST00000470621	WBP1	Q96G27	269 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	C2orf48	Q96LS8	159 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	NDN	Q99608	321 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	MTMR12	Q9C0I1	747 aa		4.61	□□□□□ -1.67
SSB-209	ENST00000470621	FAM49A	Q9H0Q0	323 aa	Predicted RBP	4.61	□□□□□ -1.67
SSB-209	ENST00000470621	PCNX3	Q9H6A9	2034 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB-209	ENST00000470621	IGHE	P01854	428 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	CCDC175	P0C221	793 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	SOX3	P41225	446 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	TAF6	P49848	677 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	CDH18	Q13634	790 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	TRIM29	Q14134	588 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	WLS	Q5T9L3	541 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	DOK6	Q6PKX4	331 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	SUSD1	Q6UWL2	747 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	CHST3	Q7LGC8	479 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	CCAR2	Q8N163	923 aa	Known RBP	4.6	□□□□□ -1.67
SSB-209	ENST00000470621	C11orf45	Q8TAV5	145 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	AGAP3	Q96P47	875 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	NYX	Q9GZU5	481 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	UPF3A	Q9H1J1	476 aa	Known RBP	4.6	□□□□□ -1.67
SSB-209	ENST00000470621	PHPT1	Q9NRX4	125 aa	Predicted RBP	4.6	□□□□□ -1.67
SSB-209	ENST00000470621	CSNK1G3	Q9Y6M4	447 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	NOTCH3	Q9UM47	2321 aa		4.6	□□□□□ -1.67
SSB-209	ENST00000470621	MTMR11	A4FU01	709 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	PI4K2B	G5E9Z4	385 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	RECQL5	O94762	991 aa	Predicted RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	PRKACG	P22612	351 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	ACAT1	P24752	427 aa	Known RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	HNF4A	P41235	474 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	MTCP1	P56278	107 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	GSC	P56915	257 aa	Predicted RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	ILF2	Q12905	390 aa	Known RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	ZNF273	Q14593	569 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	FAAP20	Q6NZ36	180 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	GTSCR1	Q86UQ5	136 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	AQP11	Q8NBQ7	271 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	KIF18A	Q8NI77	898 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	PYCR2	Q96C36	320 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	RADIL	Q96JH8	1075 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	RMDN2	Q96LZ7	410 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	RBM4B	Q9BQ04	359 aa	Known RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	GTPBP2	Q9BX10	602 aa	Known RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	FN3K	Q9H479	309 aa		4.59	□□□□□ -1.67
SSB-209	ENST00000470621	CHCHD3	Q9NX63	227 aa	Known RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.59	□□□□□ -1.67
SSB-209	ENST00000470621	C17orf105	B2RV13	164 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621		H0YAE9	185 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	F3	P13726	295 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	UGT1A4	P22310	534 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	CALCOCO2	Q13137	446 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	TRA2A	Q13595	282 aa	Known RBP eCLIP	4.58	□□□□□ -1.68	2e-7	■■■■■ 27.2
SSB-209	ENST00000470621	OPCML	Q14982	345 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	PTPN14	Q15678	1187 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	SNAI3	Q3KNW1	292 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	C2CD6	Q53TS8	623 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	CES4A	Q5XG92	561 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	LYSMD4	Q5XG99	296 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	ENPP7	Q6UWV6	458 aa		4.58	□□□□□ -1.68
SSB-209	ENST00000470621	SLC24A5	Q71RS6	500 aa		4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms