RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BARD1Q99728 777 aaKnown RBP11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 MENTQ9BUN1 341 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 NUDT9Q9BW91 350 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 SYTL2Q9HCH5 934 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 C1GALT1Q9NS00 363 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 FGF21Q9NSA1 209 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 LNPEPQ9UIQ6 1025 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC39A10Q9ULF5 831 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 COPG1Q9Y678 874 aaKnown RBP11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 PKDREJQ9NTG1 2253 aa11.45□□□□□ -0.58
SQSTM1-206ENST00000466342 DNHD1Q96M86 4753 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 MYO7BQ6PIF6 2116 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 ARHGEF33A8MVX0 844 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 GFYI3L273 518 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 BTN3A3O00478 584 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 ZG16O60844 167 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 WISP3O95389 354 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 TSPAN12O95859 305 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 CATP04040 527 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 STMN1P16949 149 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 POLR2CP19387 275 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 RAB28P51157 221 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 KPNA2P52292 529 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 RPS18P62269 152 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 SP140Q13342 867 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 ZNF460Q14592 562 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 ZKSCAN8Q15776 578 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 UAP1Q16222 522 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 CCSMST1Q4G0I0 132 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 TMEM207Q6UWW9 146 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 ADGRF3Q8IZF5 1079 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 FBXO15Q8NCQ5 510 aaPredicted RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 ASB11Q8WXH4 323 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 MRRFQ96E11 262 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 RUFY1Q96T51 708 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 SMAD5Q99717 465 aaKnown RBP11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 NRTNQ99748 197 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 RAB11FIP5Q9BXF6 653 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 EPB41L4BQ9H329 900 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 XKR8Q9H6D3 395 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 CAB39LQ9H9S4 337 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 GPAMQ9HCL2 828 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 OR6C2Q9NZP2 312 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 POMT2Q9UKY4 750 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 PLAGL1Q9UM63 463 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 BTRCQ9Y297 605 aa11.44□□□□□ -0.58
SQSTM1-206ENST00000466342 EXOC1LA0A1B0GW35 172 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 C2orf74A8MZ97 194 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 POC1B-GALNT4F8VUJ3 575 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 MYO1CO00159 1063 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 BTN3A1O00481 513 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 RASGRF2O14827 1237 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC16A5O15375 505 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 ZBTB14O43829 449 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 TIAF1O95411 115 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 C8GP07360 202 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 INHBAP08476 426 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 MSL3P1P0C860 447 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 EBLN1P0CF75 366 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 HOXB4P17483 251 aaPredicted RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 PRDX3P30048 256 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 RAB10P61026 200 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 RPS15P62841 145 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 SLC29A2Q14542 456 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 KCNAB1Q14722 419 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 CRB2Q5IJ48 1285 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 PWWP2BQ6NUJ5 590 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 FAM199XQ6PEV8 388 aaPredicted RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 UBE2R2Q712K3 238 aaPredicted RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 RAB42Q8N4Z0 105 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 NKAPQ8N5F7 415 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 ST6GALNAC3Q8NDV1 305 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 AENQ8WTP8 325 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 UBLCP1Q8WVY7 318 aaPredicted RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 PDLIM5Q96HC4 596 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 AKIRIN1Q9H9L7 192 aaPredicted RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 GPR83Q9NYM4 423 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 SPATA7Q9P0W8 599 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 C5AR2Q9P296 337 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 CIDEBQ9UHD4 219 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 ZNF180Q9UJW8 692 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 FARSAQ9Y285 508 aaKnown RBP11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 B3GNT3Q9Y2A9 372 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 IKBKGQ9Y6K9 419 aa11.43□□□□□ -0.58
SQSTM1-206ENST00000466342 HMX2A2RU54 273 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 GSAPA4D1B5 854 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 KRT87PA6NCN2 255 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 PHGDHO43175 533 aaKnown RBP11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 MAP3K7O43318 606 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 TUBBP07437 444 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 CHRM5P08912 532 aaPredicted RBP11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ERGP11308 486 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 CYP2A7P20853 494 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 CDH3P22223 829 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 CNTFP26441 200 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 MSH2P43246 934 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 SERPINB9P50453 376 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 ART3Q13508 389 aa11.42□□□□□ -0.58
SQSTM1-206ENST00000466342 IL10RAQ13651 578 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms