RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 SLC22A9Q8IVM8 553 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 SPACA3Q8IXA5 215 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 MFSD9Q8NBP5 474 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 OR1L3Q8NH93 324 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 REPS1Q96D71 796 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 MRRFQ96E11 262 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 GPN2Q9H9Y4 310 aaPredicted RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 SLC6A20Q9NP91 592 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 KLK10O43240 276 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 REEP5Q00765 189 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 FASTKQ14296 549 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 ZNF460Q14592 562 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 TBCCQ15814 346 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ZFAND4Q86XD8 727 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 TRPV3Q8NET8 790 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 RDH11Q8TC12 318 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 NKD1Q969G9 470 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ALKBH8Q96BT7 664 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 ATOH8Q96SQ7 321 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 OPTCQ9UBM4 332 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 PTBP2Q9UKA9 531 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 RAXQ9Y2V3 346 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 KLK8O60259 260 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 UGDHO60701 494 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 WDR47O94967 919 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 GUCA1CO95843 209 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SLC35G6P0C7Q6 338 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ITGAXP20702 1163 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 PWP1Q13610 501 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 PTCHD3Q3KNS1 767 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ISCA2Q86U28 154 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 DSELQ8IZU8 1212 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 KCTD4Q8WVF5 259 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SREK1Q8WXA9 508 aaKnown RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 PARD6BQ9BYG5 372 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ALG9Q9H6U8 611 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 NDOR1Q9UHB4 597 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 A0A088AWK7 358 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 A0A1B0GX78 115 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ALBP02768 609 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ALDOAP04075 364 aaKnown RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 GFAPP14136 432 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ZNF10P21506 573 aaPredicted RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 HSD17B3P37058 310 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 RHDQ02161 417 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 DNASE1L3Q13609 305 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 PDK4Q16654 411 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 TECRLQ5HYJ1 363 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ATG9BQ674R7 924 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 NXPE4Q6UWF7 544 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SUSD1Q6UWL2 747 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 CCDC81Q6ZN84 652 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 RAB43Q86YS6 212 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SNX31Q8N9S9 440 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 OR4K1Q8NGD4 311 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SNRNP27Q8WVK2 155 aaKnown RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 MR1Q95460 341 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SLC45A3Q96JT2 553 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 DCBLD2Q96PD2 775 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ATG10Q9H0Y0 220 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 LHX9Q9NQ69 397 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 ARGLU1Q9NWB6 273 aaPredicted RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 LGALS13Q9UHV8 139 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SPTBN4Q9H254 2564 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 CCDC151A5D8V7 595 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 K7EPI3 171 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 MYZAPP0CAP1 466 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 KRT15P19012 456 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 IL10P22301 178 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 AVPR1BP47901 424 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 CCT5P48643 541 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 VAC14Q08AM6 782 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 NAA30Q147X3 362 aaPredicted RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 SETDB1Q15047 1291 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 PCBP2Q15366 365 aaKnown RBP eCLIP10.25□□□□□ -0.771e-10■□□□□ 8.7
UBR4-208ENST00000459947 ERCC6LQ2NKX8 1250 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 CCDC153Q494R4 210 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 PWWP2BQ6NUJ5 590 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 C2orf73Q8N5S3 287 aaPredicted RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 CSNK1A1LQ8N752 337 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 NACC2Q96BF6 587 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 NXNL1Q96CM4 212 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 WDR34Q96EX3 536 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 PTCD3Q96EY7 689 aaKnown RBP10.25□□□□□ -0.77
UBR4-208ENST00000459947 CTRCQ99895 268 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 CD244Q9BZW8 370 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 MKS1Q9NXB0 559 aa10.25□□□□□ -0.77
UBR4-208ENST00000459947 SRRM3A6NNA2 597 aaPredicted RBP10.24□□□□□ -0.77
UBR4-208ENST00000459947 C1GALT1C1LP0DN25 315 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 HNF4AP41235 474 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 DCDP81605 110 aaKnown RBP10.24□□□□□ -0.77
UBR4-208ENST00000459947 FAM53BQ14153 422 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 KCNAB1Q14722 419 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 ZIC1Q15915 447 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 PRTGQ2VWP7 1150 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 LRIG3Q6UXM1 1119 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 ASPGQ86U10 573 aa10.24□□□□□ -0.77
UBR4-208ENST00000459947 CENPLQ8N0S6 344 aaPredicted RBP10.24□□□□□ -0.77
UBR4-208ENST00000459947 UHMK1Q8TAS1 419 aaKnown RBP10.24□□□□□ -0.77
UBR4-208ENST00000459947 ACAT2Q9BWD1 397 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms