RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 TMEM114B3SHH9 223 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 H7BY64 318 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PLD2O14939 933 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 HCRTR1O43613 425 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 CTSVO60911 334 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 FGF3P11487 239 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 EPORP19235 508 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 BGNP21810 368 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 EEF1DP29692 281 aaKnown RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 LSP1P33241 339 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 GABRA4P48169 554 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 HERVK_113P63132 956 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 CDC16Q13042 620 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PCBP2Q15366 365 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 GPR19Q15760 415 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 KIF26BQ2KJY2 2108 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 DEFB110Q30KQ9 67 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 CFAP157Q5JU67 520 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 CATSPEREQ5SY80 951 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 ZNF425Q6IV72 752 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 METTL2BQ6P1Q9 378 aaKnown RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 LRRC70Q7Z2Q7 622 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PAQR7Q86WK9 346 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 WDR36Q8NI36 951 aaKnown RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 SLC5A11Q8WWX8 675 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 ZNF75CPQ92670 426 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 L3HYPDHQ96EM0 354 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 TCTN2Q96GX1 697 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PRR11Q96HE9 360 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PRAP1Q96NZ9 151 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PLCD4Q9BRC7 762 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 ERVK-6Q9BXR3 956 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 ACSS2Q9NR19 701 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 AKAP7Q9P0M2 348 aaPredicted RBP12.51□□□□□ -0.41
VPS33A-202ENST00000451053 OPTCQ9UBM4 332 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 PISDQ9UG56 409 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 DYRK1BQ9Y463 629 aa12.51□□□□□ -0.41
VPS33A-202ENST00000451053 E7EQ34 232 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 K7EPI3 171 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 HAT1O14929 419 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 NPHS1O60500 1241 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 SHOX2O60902 331 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 JMJD7P0C870 316 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 IMPDH1P20839 514 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 MAPK10P53779 464 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 GABREP78334 506 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 CSNK1G2P78368 415 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 MEF2AQ02078 507 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 FOXM1Q08050 763 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 STX3Q13277 289 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 EIF3IQ13347 325 aaKnown RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 NAA25Q14CX7 972 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TMTC4Q5T4D3 741 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TTC19Q6DKK2 380 aaPredicted RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 RPS27LQ71UM5 84 aaKnown RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 ADCK2Q7Z695 626 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TMPRSS11BQ86T26 416 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 PLD3Q8IV08 490 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 KIRREL3Q8IZU9 778 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 DNAJC22Q8N4W6 341 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TEX9Q8N6V9 391 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 PMEPA1Q969W9 287 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 ZUFSPQ96AP4 578 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 NSUN5Q96P11 429 aaKnown RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 FCRL4Q96PJ5 515 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TMEM237Q96Q45 408 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 OR6C1Q96RD1 312 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TRMOQ9BU70 441 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 CHRNA10Q9GZZ6 450 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 NSRP1Q9H0G5 558 aaKnown RBP12.5□□□□□ -0.41
VPS33A-202ENST00000451053 SPNS1Q9H2V7 528 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 SYNPO2LQ9H987 977 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 POLR1BQ9H9Y6 1135 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 APMAPQ9HDC9 416 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TMEM184CQ9NVA4 438 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 ANKMY1Q9P2S6 941 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 PCTPQ9UKL6 214 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 SNX7Q9UNH6 387 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 NEUROG3Q9Y4Z2 214 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 KCNE2Q9Y6J6 123 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 PCM1Q15154 2024 aa12.5□□□□□ -0.41
VPS33A-202ENST00000451053 TCP11X1B4DZS4 312 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 B4E171 279 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 E2F3O00716 465 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 MAP3K7O43318 606 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 PRAMEF4O60810 478 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 CTSBP07858 339 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 VIMP08670 466 aaKnown RBP12.49□□□□□ -0.41
VPS33A-202ENST00000451053 RPS17P08708 135 aaKnown RBP12.49□□□□□ -0.41
VPS33A-202ENST00000451053 HRH2P25021 359 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 VARSP26640 1264 aaKnown RBP12.49□□□□□ -0.41
VPS33A-202ENST00000451053 TSPAN7P41732 249 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 PIK3CGP48736 1102 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 CCR8P51685 355 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 MC2RQ01718 297 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 TUBB3Q13509 450 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 PRAMEF9Q5VWM5 478 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 NXPE4Q6UWF7 544 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 SLCO4C1Q6ZQN7 724 aa12.49□□□□□ -0.41
VPS33A-202ENST00000451053 RNF44Q7L0R7 432 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms