RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 LGR4Q9BXB1 951 aa16.73■□□□□ 0.27
PTPRF-209ENST00000438120 SEC61A2Q9H9S3 476 aa16.73■□□□□ 0.27
PTPRF-209ENST00000438120 DNAJB4Q9UDY4 337 aa16.73■□□□□ 0.27
PTPRF-209ENST00000438120 M0R2N6 131 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 G6PDP11413 515 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 VBP1P61758 197 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 ADAM8P78325 824 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 PLGLB1Q02325 96 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 SLC35G1Q2M3R5 365 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 ANO7Q6IWH7 933 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 NSUN3Q9H649 340 aaKnown RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 CRTAC1Q9NQ79 661 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 PEX16Q9Y5Y5 336 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 SLIT2O94813 1529 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 MANBAO00462 879 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 ITGB1P05556 798 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 ATP5A1P25705 553 aaKnown RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 PTX3P26022 381 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 RAB2AP61019 212 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 C14orf80Q86SX3 495 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 TMBIM1Q969X1 311 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 HAPLN1P10915 354 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 AKR1D1P51857 326 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 CCDC54Q8NEL0 328 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 POF1BQ8WVV4 589 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 TAS2R7Q9NYW3 318 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 RPL36Q9Y3U8 105 aaKnown RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 AFDNP55196 1824 aaKnown RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 PMM2O15305 246 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF20P17024 532 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 CD47Q08722 323 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF648Q5T619 568 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 CAMKVQ8NCB2 501 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 TLR4O00206 839 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 AP3S2P59780 193 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 CDCA2Q69YH5 1023 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-209ENST00000438120 CEACAM20Q6UY09 585 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 TPRG1Q6ZUI0 275 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 SGIP1Q9BQI5 828 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 SIX4Q9UIU6 781 aa16.72■□□□□ 0.27
PTPRF-209ENST00000438120 GRXCR1A8MXD5 290 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 FCER2P06734 321 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 CD36P16671 472 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 DAG1Q14118 895 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF776Q68DI1 518 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-209ENST00000438120 HCAR2Q8TDS4 363 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 TOR3AQ9H497 397 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 KLRF1Q9NZS2 232 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 MARK1Q9P0L2 795 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 TBX1O43435 398 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 KCNE1P15382 129 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 AGXTP21549 392 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 OR12D2P58182 307 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 LAPTM4AQ15012 233 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 SLC29A4Q7RTT9 530 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 NDC1Q9BTX1 674 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 TIMMDC1Q9NPL8 285 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 RHCGQ9UBD6 479 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 GABRQQ9UN88 632 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 SNED1Q8TER0 1413 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 RNF144AP50876 292 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-209ENST00000438120 MTTPP55157 894 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 DUOXA1Q1HG43 343 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 OR8H1Q8NGG4 311 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 FBXL18Q96ME1 805 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 SLC35F4A4IF30 521 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 ANXA8P13928 327 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 NDUFS1P28331 727 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 MAP3K8P41279 467 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 NPTX1Q15818 432 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 ARHGAP40Q5TG30 622 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 PHTF2Q8N3S3 785 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF527Q8NB42 609 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 OVCA2Q8WZ82 227 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 RBCK1Q9BYM8 510 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 ADAM7Q9H2U9 754 aa16.71■□□□□ 0.27
PTPRF-209ENST00000438120 MED1Q15648 1581 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-209ENST00000438120 EIF1AYO14602 144 aaKnown RBP16.71■□□□□ 0.26
PTPRF-209ENST00000438120 PSKH1P11801 424 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 PGAM2P15259 253 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 ACSL1P33121 698 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 GPR17Q13304 367 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 TYSND1Q2T9J0 566 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 FRMD7Q6ZUT3 714 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 NANOGNBQ7Z5D8 188 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF615Q8N8J6 731 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 NEURL4Q96JN8 1562 aa16.71■□□□□ 0.26
PTPRF-209ENST00000438120 SERPINA3P01011 423 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF3P17036 446 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 TBC1D25Q3MII6 688 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 AGTRAPQ6RW13 159 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 KLHL36Q8N4N3 616 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SMPDL3AQ92484 453 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SOX14O95416 240 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 CBLP22681 906 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 AP2S1P53680 142 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 CDH15P55291 814 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 EEFSECP57772 596 aaKnown RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF792Q3KQV3 632 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 GPRC6AQ5T6X5 926 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms