RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 EGFL8Q99944 293 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 HAUS8Q9BT25 410 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 CD244Q9BZW8 370 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 SPNS1Q9H2V7 528 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 C12orf65Q9H3J6 166 aaKnown RBP11.91□□□□□ -0.5
USP40-205ENST00000430158 TMEM184CQ9NVA4 438 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 AKAP7Q9P0M2 348 aaPredicted RBP11.91□□□□□ -0.5
USP40-205ENST00000430158 DCDC2Q9UHG0 476 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 SNX7Q9UNH6 387 aa11.91□□□□□ -0.5
USP40-205ENST00000430158 ZFHX4Q86UP3 3567 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 KCNE1BA0A087WTH5 132 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 LOC105369274A0A096LPK9 316 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 LOC102723532A0A0G2JNH3 316 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 C1QTNF9BB2RNN3 333 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 SUPT3HB4E1H0 165 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 G3V2L1 256 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 TAF4O00268 1085 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 HAT1O14929 419 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 TLX3O43711 291 aaPredicted RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 DLX3O60479 287 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 SUPT3HO75486 399 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 C1QTNF9P0C862 333 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 CDH1P12830 882 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 ZNF28P17035 718 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 MAPK10P53779 464 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 RAB15P59190 212 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 ERVPABLB-1P60509 514 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 NFKB2Q00653 900 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 TUBB3Q13509 450 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 TSTA3Q13630 321 aaPredicted RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 PFKFB4Q16877 469 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 TBC1D25Q3MII6 688 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 KRT71Q3SY84 523 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 CATSPEREQ5SY80 951 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 CEP85LQ5SZL2 805 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 PRAMEF17Q5VTA0 474 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 FRMPD2BQ6IN97 320 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 PWWP2BQ6NUJ5 590 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 METTL2BQ6P1Q9 378 aaKnown RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 FOXR1Q6PIV2 292 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 C17orf64Q86WR6 236 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 DTX1Q86Y01 620 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 OR4N4Q8N0Y3 316 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 C4orf33Q8N1A6 199 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 OR8K5Q8NH50 307 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 MDM1Q8TC05 714 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 SLC5A11Q8WWX8 675 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 EXT2Q93063 718 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 ZDHHC16Q969W1 377 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 PGM2Q96G03 612 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 ZNF578Q96N58 590 aaPredicted RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 ZPBPQ9BS86 351 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 C1QTNF3Q9BXJ4 246 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 SPRTNQ9H040 489 aaPredicted RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 DNAJC11Q9NVH1 559 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 SOHLH2Q9NX45 425 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 SCN3AQ9NY46 2000 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 WWOXQ9NZC7 414 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 CPSF2Q9P2I0 782 aaKnown RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 PLCL2Q9UPR0 1127 aa11.9□□□□□ -0.5
USP40-205ENST00000430158 TMEM184BQ9Y519 407 aaPredicted RBP11.9□□□□□ -0.5
USP40-205ENST00000430158 DSPP15924 2871 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 FITM1A5D6W6 292 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 A8MT66 165 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 TMEM150CB9EJG8 249 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 STX16-NPEPL1H3BU86 382 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 E2F3O00716 465 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 STX16O14662 325 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 POLR1CO15160 346 aaPredicted RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 TYROBPO43914 113 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 LCMT2O60294 686 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 PLIN3O60664 434 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 GLRA3O75311 464 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 WFS1O76024 890 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 WDR47O94967 919 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 SIX3O95343 332 aaPredicted RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 DLGAP3O95886 979 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 CD22P20273 847 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 CASP2P42575 452 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 SNRPNP63162 240 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 FOXM1Q08050 763 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 CDC16Q13042 620 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 NAA25Q14CX7 972 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 PRTGQ2VWP7 1150 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 DEFB110Q30KQ9 67 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 TMTC4Q5T4D3 741 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 DCAF12Q5T6F0 453 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 THEMIS2Q5TEJ8 643 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 NXPE4Q6UWF7 544 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 CEACAM20Q6UY09 585 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 LRRC70Q7Z2Q7 622 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 TIPARPQ7Z3E1 657 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 VN1R4Q7Z5H5 301 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 EXOC3L1Q86VI1 746 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 PLD3Q8IV08 490 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 SRRM1Q8IYB3 904 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 PTGR2Q8N8N7 351 aaPredicted RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 SLC38A9Q8NBW4 561 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 ZNF740Q8NDX6 193 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms