RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 TMTC4Q5T4D3 741 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 HENMT1Q5T8I9 393 aaKnown RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 KLHL17Q6TDP4 642 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 KCTD8Q6ZWB6 473 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 CACTIN-AS1Q8N1I8 211 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 MRPS26Q9BYN8 205 aaKnown RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 KAT8Q9H7Z6 458 aaKnown RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 CD93Q9NPY3 652 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 CEPT1Q9Y6K0 416 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 TRIOBPQ9H2D6 2365 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 LINC01565O15544 149 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 HOXB3P14651 431 aaPredicted RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 IL12RB1P42701 662 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 RNF144AP50876 292 aaPredicted RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 DBPQ10586 325 aaPredicted RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 SLBPQ14493 270 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 ZNF385BQ569K4 471 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 XKR5Q6UX68 686 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 ZNF547Q8IVP9 402 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 REM2Q8IYK8 340 aaPredicted RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 CHPFQ8IZ52 775 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 OR7G3Q8NG95 312 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 USP7Q93009 1102 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 BDH2Q9BUT1 245 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 AMBRA1Q9C0C7 1298 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 PNPLA3Q9NST1 481 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 VPS29Q9UBQ0 182 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 WARS2Q9UGM6 360 aaKnown RBP11.53□□□□□ -0.56
PTPRN-204ENST00000423636 PCDHGA8Q9Y5G5 932 aa11.53□□□□□ -0.56
PTPRN-204ENST00000423636 A0A1W2PPW3 197 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 CDH2P19022 906 aaPredicted RBP11.52□□□□□ -0.56
PTPRN-204ENST00000423636 KCNAB2Q13303 367 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 GAB1Q13480 694 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 NLGN4XQ8N0W4 816 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 SHISA5Q8N114 240 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 KLHL25Q9H0H3 589 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 FANCEQ9HB96 536 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 CTPS2Q9NRF8 586 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 THG1LQ9NWX6 298 aaKnown RBP11.52□□□□□ -0.56
PTPRN-204ENST00000423636 DEC1Q9P2X7 70 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 HSFX1Q9UBD0 423 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 KCNK6Q9Y257 313 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 ZNF510Q9Y2H8 683 aa11.52□□□□□ -0.56
PTPRN-204ENST00000423636 MGAT4DA6NG13 374 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 SPINT1O43278 529 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 AHCYL1O43865 530 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ATG13O75143 517 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 RASAL1O95294 804 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 CYP2A6P11509 494 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ETFAP13804 333 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 HTR1EP28566 365 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 RPL26P61254 145 aaKnown RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 VLDLRP98155 873 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PRSS53Q2L4Q9 553 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 SLC36A3Q495N2 470 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 AASDHQ4L235 1098 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 RUNDC3AQ59EK9 446 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 EGFLAMQ63HQ2 1017 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TRIM46Q7Z4K8 759 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ZC3H7AQ8IWR0 971 aaKnown RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 MICU2Q8IYU8 434 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TBC1D21Q8IYX1 336 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 NAGSQ8N159 534 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ZNF641Q96N77 438 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PHOX2BQ99453 314 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ANKRA2Q9H9E1 313 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 IFT80Q9P2H3 777 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 SLC8A2Q9UPR5 921 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PCDHB3Q9Y5E6 796 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TOR1BO14657 336 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 KPNA5O15131 536 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PCDH7O60245 1069 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 LATS1O95835 1130 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 GPIP06744 558 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PSMA3P25788 255 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TIE1P35590 1138 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TXNL4AP83876 142 aaKnown RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 IL5RAQ01344 420 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 FGD3Q5JSP0 725 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ERAP2Q6P179 960 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 BRAT1Q6PJG6 821 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 MEX3DQ86XN8 651 aaKnown RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 CBARPQ8N350 705 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 SPPL2AQ8TCT8 520 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 SEZ6LQ9BYH1 1024 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ANKRD60Q9BZ19 345 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PLA2G2FQ9BZM2 168 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 FAM192AQ9GZU8 254 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 ZNF696Q9H7X3 374 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 AASDHPPTQ9NRN7 309 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 CUEDC1Q9NWM3 386 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TRPS1Q9UHF7 1281 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 TESMINQ9Y4I5 508 aa11.52□□□□□ -0.57
PTPRN-204ENST00000423636 PTPRSQ13332 1948 aa11.51□□□□□ -0.57
PTPRN-204ENST00000423636 PLXNB3Q9ULL4 1909 aa11.51□□□□□ -0.57
PTPRN-204ENST00000423636 KCNE1BA0A087WTH5 132 aa11.51□□□□□ -0.57
PTPRN-204ENST00000423636 OR52A4PA6NMU1 304 aa11.51□□□□□ -0.57
PTPRN-204ENST00000423636 AGAP14A8MT82 685 aa11.51□□□□□ -0.57
PTPRN-204ENST00000423636 FAM227AF5H4B4 570 aa11.51□□□□□ -0.57
PTPRN-204ENST00000423636 J3KTA2 159 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms