RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LPGAT1Q92604 370 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 LENG1Q96BZ8 264 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 S100A16Q96FQ6 103 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF599Q96NL3 588 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 EFCAB11Q9BUY7 163 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SMPD3Q9NY59 655 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 UTS2RQ9UKP6 389 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 FCF1Q9Y324 198 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 FADS3Q9Y5Q0 445 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 COMMD3-BMI1R4GMX3 469 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF12P17014 697 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PRPS1L1P21108 318 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 THBS2P35442 1172 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 TAS2R43P59537 309 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 GNMTQ14749 295 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ARMCX6Q7L4S7 300 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 RALGPS2Q86X27 583 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PCED1BQ96HM7 432 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SLC35A5Q9BS91 424 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 DUSP26Q9BV47 211 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 DNTTIP1Q9H147 329 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 KCNH6Q9H252 994 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ADAP2Q9NPF8 381 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 C2orf74A8MZ97 194 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 AIREO43918 545 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZMPSTE24O75844 475 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CCNKO75909 580 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ACP5P13686 325 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 MATN1P21941 496 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 VIPR1P32241 457 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 HSD11B2P80365 405 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 BST1Q10588 318 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SCARB2Q14108 478 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SCGB2B2Q4G0G5 96 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 OGFRL1Q5TC84 451 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PAQR7Q86WK9 346 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PIWIL1Q96J94 861 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 LPIN3Q9BQK8 851 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PELOQ9BRX2 385 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF700Q9H0M5 742 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 HPF1Q9NWY4 346 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZFR2Q9UPR6 939 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ICKQ9UPZ9 632 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 A0A1W2PRB8 838 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 FABP12A6NFH5 140 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 M0R036 132 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 MPPED1O15442 326 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 GLSO94925 669 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CD63P08962 238 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 HOXA10P31260 410 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SPRYD7Q5W111 196 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 AHSA2Q719I0 299 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ABHD12BQ7Z5M8 362 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ART4Q93070 314 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 KCTD7Q96MP8 289 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 KATNBL1Q9H079 304 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PARPBPQ9NWS1 579 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 FLRT1Q9NZU1 646 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CNTN3Q9P232 1028 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 KIDINS220Q9ULH0 1771 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SMIM28A0A1B0GU29 152 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 A0A1W2PPL8 197 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 OR5K4A6NMS3 321 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 CSN2P05814 226 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 E2F1Q01094 437 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 BNIP3Q12983 259 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 VMACQ2NL98 169 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TATDN1Q6P1N9 297 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 RBM44Q6ZP01 1051 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TRAPPC6BQ86SZ2 158 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ZDHHC21Q8IVQ6 265 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PGAM4Q8N0Y7 254 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 OR5L2Q8NGL0 311 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SPATA22Q8NHS9 363 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FAM110BQ8TC76 370 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 EZH1Q92800 747 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 KCTD15Q96SI1 283 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 LRRC4CQ9HCJ2 640 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF226Q9NYT6 803 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 VPS29Q9UBQ0 182 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SCP2D1Q9UJQ7 156 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NUP50Q9UKX7 468 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 POFUT2Q9Y2G5 429 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TMX2-CTNND1H3BSU7 103 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 HTR1AP08908 422 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 CCL5P13501 91 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 HK1P19367 917 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NPR2P20594 1047 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PTDSS1P48651 473 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TRAM1Q15629 374 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 SLC36A3Q495N2 470 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 PARP8Q8N3A8 854 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 WDSUB1Q8N9V3 476 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FRS2Q8WU20 508 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 DHX33Q9H6R0 707 aaKnown RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 DKK3Q9UBP4 350 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 TEX13DA0A0J9YY54 714 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-204ENST00000423058 NPHS1O60500 1241 aa6.68□□□□□ -1.34
SCN1A-204ENST00000423058 FBLP22087 321 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms