RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PDYNP01213 254 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 CSTF3Q12996 717 aaKnown RBP16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 RBBP5Q15291 538 aaKnown RBP16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 GALNTL6Q49A17 601 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 XKR7Q5GH72 579 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 SPDYAQ5MJ70 313 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 FAM219BQ5XKK7 198 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 OGFOD3Q6PK18 319 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 ADGRF3Q8IZF5 1079 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 OR2L3Q8NG85 312 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 OR2A1Q8NGT9 310 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 CATSPER2Q96P56 530 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 GTPBP2Q9BX10 602 aaKnown RBP16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 PITHD1Q9GZP4 211 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 NMUR2Q9GZQ4 415 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 ARRDC1-AS1Q9H2J1 176 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 AKTIPQ9H8T0 292 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 CAPN10Q9HC96 672 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 CUEDC1Q9NWM3 386 aaPredicted RBP16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 HRASLS2Q9NWW9 162 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 SPHK1Q9NYA1 384 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 ACTR10Q9NZ32 417 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 NLGN3Q9NZ94 848 aa16.49■□□□□ 0.23
CCDC28B-202ENST00000421922 LILRA5A6NI73 299 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 PATE3B3GLJ2 98 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 H7BY64 318 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 KHNYNO15037 678 aaKnown RBP16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 PRAMEF4O60810 478 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 PEX11AO75192 247 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 UBXN7O94888 489 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 FKBP9O95302 570 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 HSD3B1P14060 373 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 CD22P20273 847 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 HSD3B2P26439 372 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 MEF2AQ02078 507 aaPredicted RBP16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 MAD2L1Q13257 205 aaPredicted RBP16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 TUBB3Q13509 450 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 PRAMEF9Q5VWM5 478 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 TMIGD1Q6UXZ0 262 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 GPR156Q8NFN8 814 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 ABHD11Q8NFV4 315 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 C3orf30Q96M34 536 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 PRAP1Q96NZ9 151 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 TBC1D10AQ9BXI6 508 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 MYLK2Q9H1R3 596 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 FARSBQ9NSD9 589 aaKnown RBP16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 TMEM184CQ9NVA4 438 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 NMRK1Q9NWW6 199 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 ADGRE2Q9UHX3 823 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 SNX7Q9UNH6 387 aa16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 ZFHX2Q9C0A1 2572 aaPredicted RBP16.48■□□□□ 0.23
CCDC28B-202ENST00000421922 OR5K3A6NET4 321 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 ANKDD1BA6NHY2 528 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 ZW10O43264 779 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 PROS1P07225 676 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 EZRP15311 586 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 UGT2B7P16662 529 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 TYRP1P17643 537 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 PEBP1P30086 187 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 SERPINB1P30740 379 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 NEK2P51955 445 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 REEP5Q00765 189 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 E2F2Q14209 437 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 RPS6KA2Q15349 733 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 SHBQ15464 509 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 LAIR1Q6GTX8 287 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 ZCCHC8Q6NZY4 707 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 SPATA19Q7Z5L4 167 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 GATAD2AQ86YP4 633 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 SLC25A45Q8N413 288 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 FNDC5Q8NAU1 212 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 OR7G3Q8NG95 312 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 PRR11Q96HE9 360 aaPredicted RBP16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 AHCYL2Q96HN2 611 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 MTERF1Q99551 399 aaKnown RBP16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 DPH7Q9BTV6 452 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 CAPN7Q9Y6W3 813 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 HEATR5BQ9P2D3 2071 aa16.47■□□□□ 0.23
CCDC28B-202ENST00000421922 CABIN1Q9Y6J0 2220 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 PPM1DO15297 605 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 PRICKLE3O43900 615 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 ERVK-8P63133 956 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 IRX1P78414 480 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 SQLEQ14534 574 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 SLC5A12Q1EHB4 618 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 FOXR1Q6PIV2 292 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 SPESP1Q6UW49 350 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 LARP4Q71RC2 724 aaKnown RBP eCLIP16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 TRIM46Q7Z4K8 759 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 CLNKQ7Z7G1 428 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 C17orf82Q86X59 251 aaPredicted RBP16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 LAS2Q8IYD9 372 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 FITM2Q8N6M3 262 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 TTLQ8NG68 377 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 MARK4Q96L34 752 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 BRF2Q9HAW0 419 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 LRTM1Q9HBL6 345 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 FAM86C1Q9NVL1 165 aa16.46■□□□□ 0.23
CCDC28B-202ENST00000421922 LRIT1Q9P2V4 623 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms