RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 LAPTM4BQ86VI4 370 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 FAM72BQ86X60 149 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 TMEM156Q8N614 296 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 TOP1MTQ969P6 601 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 MOAP1Q96BY2 351 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 PGAP3Q96FM1 320 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 CADM1Q9BY67 442 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 NOL6Q9H6R4 1146 aaKnown RBP16.8■□□□□ 0.28
PHRF1-202ENST00000413872 ALKBH4Q9NXW9 302 aa16.8■□□□□ 0.28
PHRF1-202ENST00000413872 MYCLP1P12525 358 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 PDX1P52945 283 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF846Q147U1 533 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF630Q2M218 657 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 KIAA1161Q6NSJ0 714 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF852Q6ZMS4 543 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 FOXJ1Q92949 421 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 DENND2DQ9H6A0 471 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 RGPD2P0DJD1 1756 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 MAFKO60675 156 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 CYB5AP00167 134 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 YAP1P46937 504 aaKnown RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 STK19P49842 368 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 TARDBPQ13148 414 aaKnown RBP eCLIP16.79■□□□□ 0.281e-6■■■■□ 21.6
PHRF1-202ENST00000413872 OR4F3Q6IEY1 312 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 OR2AJ1Q8NGZ0 328 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 MRGPRX2Q96LB1 330 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 WDR12Q9GZL7 423 aaKnown RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 FAM149AA5PLN7 773 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF217O75362 1048 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 GSTT1P30711 240 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 CASP9P55211 416 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 PPP3R1P63098 170 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 RBM44Q6ZP01 1051 aaKnown RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 RHEBL1Q8TAI7 183 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 LRTOMTQ8WZ04 291 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 HHATLQ9HCP6 504 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 HRASLS2Q9NWW9 162 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 OAS3Q9Y6K5 1087 aaKnown RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 H0YGN5 161 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 NADKO95544 446 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-202ENST00000413872 APBB3O95704 486 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 AHCYP23526 432 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ACRV1P26436 265 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ETV3P41162 512 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 B3GNT9Q6UX72 402 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 KCT2Q8NC54 265 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ASB9Q96DX5 294 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF382Q96SR6 550 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 TRIM2Q9C040 744 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 TMEM138Q9NPI0 162 aa16.79■□□□□ 0.28
PHRF1-202ENST00000413872 A0A1W2PQU0 124 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 PREPP48147 710 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 RPL6Q02878 288 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 CCNIQ14094 377 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 SGCBQ16585 318 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 MCFD2Q8NI22 146 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 KLHL6Q8WZ60 621 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 TRIM63Q969Q1 353 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 MCCC2Q9HCC0 563 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 SPATA6Q9NWH7 488 aaPredicted RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 PRSS51A0A1B0GVH4 220 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 ADARP55265 1226 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 ABHD18Q0P651 414 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 PDCD4Q53EL6 469 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 CLLU1OSQ5K130 101 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 KLHDC10Q6PID8 442 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 DNM1P34Q6PK57 102 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 SLC39A11Q8N1S5 342 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 DGCR14Q96DF8 476 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 TAS2R1Q9NYW7 299 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 RGPD1P0DJD0 1748 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 CAPN5O15484 640 aaPredicted RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 LILRB3O75022 631 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 RSL1D1O76021 490 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 HSD3B1P14060 373 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 HSD3B2P26439 372 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 GKP32189 559 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 SDC2P34741 201 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF763Q0D2J5 394 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 FRMD7Q6ZUT3 714 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 CYS1Q717R9 158 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 FCGR1BQ92637 280 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 TRIM8Q9BZR9 551 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 ZNF726A6NNF4 738 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 ITM2AO43736 263 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 RPS13P62277 151 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 PM20D1Q6GTS8 502 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 HIST1H2AAQ96QV6 131 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 TRIM39Q9HCM9 518 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 GDE1Q9NZC3 331 aa16.78■□□□□ 0.28
PHRF1-202ENST00000413872 RPL36Q9Y3U8 105 aaKnown RBP16.78■□□□□ 0.28
PHRF1-202ENST00000413872 RFPL2O75678 378 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 MT-ND1P03886 318 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 CDK6Q00534 326 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 GPR68Q15743 365 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 CAND1Q86VP6 1230 aaKnown RBP16.77■□□□□ 0.28
PHRF1-202ENST00000413872 NPAS3Q8IXF0 933 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 OR4K17Q8NGC6 315 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 NODALQ96S42 347 aa16.77■□□□□ 0.28
PHRF1-202ENST00000413872 NELL2Q99435 816 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms