RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CCL16O15467 120 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 S1PR4O95977 384 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 ERVK-8P63133 956 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 RUNX1T1Q06455 604 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 LRRC74AQ0VAA2 488 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 TSTQ16762 297 aaKnown RBP12.59□□□□□ -0.39
PTPRN-202ENST00000409251 PLPP4Q5VZY2 271 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 LAIR2Q6ISS4 152 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 DOK6Q6PKX4 331 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 ZNF438Q7Z4V0 828 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 GOLM1Q8NBJ4 401 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 EEF1AKMT1Q8WVE0 214 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 IL4I1Q96RQ9 567 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 NECTIN3Q9NQS3 549 aa12.59□□□□□ -0.39
PTPRN-202ENST00000409251 CXXC1Q9P0U4 656 aaPredicted RBP12.59□□□□□ -0.39
PTPRN-202ENST00000409251 FCF1Q9Y324 198 aaKnown RBP12.59□□□□□ -0.39
PTPRN-202ENST00000409251 KMOO15229 486 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 HTR1EP28566 365 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 KRT6CP48668 564 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 RPP38P78345 283 aaKnown RBP12.58□□□□□ -0.39
PTPRN-202ENST00000409251 PDZK1Q5T2W1 519 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 HECTD3Q5T447 861 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 RNF219Q5W0B1 726 aaPredicted RBP12.58□□□□□ -0.39
PTPRN-202ENST00000409251 PGBD5Q8N414 524 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 LPCAT1Q8NF37 534 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 OR4K2Q8NGD2 314 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 OR5K1Q8NHB7 308 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 ZNF583Q96ND8 569 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 ZSCAN5AQ9BUG6 496 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 CATSPERZQ9NTU4 200 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 DUSP12Q9UNI6 340 aa12.58□□□□□ -0.39
PTPRN-202ENST00000409251 OR6C75A6NL08 312 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 HNRNPCL2B2RXH8 293 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 I3L521 148 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 KIAA0513O60268 411 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 OR1E2P47887 323 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF135P52742 658 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-202ENST00000409251 EMX2Q04743 252 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 SEMA3AQ14563 771 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 TYSND1Q2T9J0 566 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 BTBD16Q32M84 506 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 PYDC2Q56P42 97 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 CARD16Q5EG05 197 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 RNASE12Q5GAN4 147 aaKnown RBP12.58□□□□□ -0.4
PTPRN-202ENST00000409251 LETMD1Q6P1Q0 360 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 CCDC28AQ8IWP9 274 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 DNASE1L2Q92874 299 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 VPS35Q96QK1 796 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 EBPLQ9BY08 206 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 REEP1Q9H902 201 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 DNMT3LQ9UJW3 386 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 YIPF1Q9Y548 306 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 FAM234BA2RU67 622 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 PLOD3O60568 738 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 TBL1XO60907 577 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 RPLP2P05387 115 aaKnown RBP12.58□□□□□ -0.4
PTPRN-202ENST00000409251 RHOCP08134 193 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 PSKH1P11801 424 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ARHGEF7Q14155 803 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ABRAXAS2Q15018 415 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF691Q5VV52 312 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF549Q6P9A3 640 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 GTF2H4Q92759 462 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 PGAP3Q96FM1 320 aaPredicted RBP12.58□□□□□ -0.4
PTPRN-202ENST00000409251 FUBP3Q96I24 572 aaKnown RBP eCLIP12.58□□□□□ -0.4
PTPRN-202ENST00000409251 C8orf48Q96LL4 319 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF558Q96NG5 402 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 ZDHHC4Q9NPG8 344 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 F5P12259 2224 aa12.58□□□□□ -0.4
PTPRN-202ENST00000409251 NRG2O14511 850 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 PGRP06401 933 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 PCMT1P22061 227 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GRK5P34947 590 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 POU6F2P78424 691 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 PLEKHG6Q3KR16 790 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 OR8H3Q8N146 312 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 SLC43A3Q8NBI5 491 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 WDR36Q8NI36 951 aaKnown RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 TRIM43Q96BQ3 446 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 DUS3LQ96G46 650 aaKnown RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 SLC6A13Q9NSD5 602 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 NEU3Q9UQ49 428 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 H7C4K7 107 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 WWP2O00308 870 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 SH3BP5O60239 455 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 NOS1APO75052 506 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 EEDO75530 441 aaKnown RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 PAPSS2O95340 614 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GLUD1P00367 558 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 MTHFD2P13995 350 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 MYOGP15173 224 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GGT1P19440 569 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 CCNCP24863 283 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 RENBPP51606 427 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GALK2Q01415 458 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 SIRPB2Q5JXA9 342 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 DGKKQ5KSL6 1271 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 DPY19L3Q6ZPD9 716 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 CACUL1Q86Y37 369 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GPR65Q8IYL9 337 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms