RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 STMND1H3BQB6 276 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CES2O00748 559 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 VCYO14598 125 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CSO75390 466 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 VPS26AO75436 327 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 JTBO76095 146 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 UGT2B4P06133 528 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CD63P08962 238 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MMP10P09238 476 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ELFN1P0C7U0 828 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MYZAPP0CAP1 466 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 RALBP11234 206 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 KRT3P12035 628 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF18P17022 549 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SRD5A1P18405 259 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF84P51523 738 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MFAP3P55082 362 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 NUCB2P80303 420 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CDK3Q00526 305 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 LIPEQ05469 1076 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 BCL7AQ4VC05 210 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 PHYHD1Q5SRE7 291 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TREML2Q5T2D2 321 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 VWA5B1Q5TIE3 1220 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM268Q5VZI3 342 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FIGLAQ6QHK4 219 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM26Q6ZUK4 368 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 NANOGNBQ7Z5D8 188 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ASPGQ86U10 573 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SERINC5Q86VE9 423 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FAM228AQ86W67 206 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM126BQ8IUX1 230 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MISPQ8IVT2 679 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 C1orf87Q8N0U7 546 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF611Q8N823 705 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 GOLGA5Q8TBA6 731 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ACMSDQ8TDX5 336 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FBXL8Q96CD0 374 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 LRRC45Q96CN5 670 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 DAZAP1Q96EP5 407 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 RASL10BQ96S79 203 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SMC6Q96SB8 1091 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF347Q96SE7 839 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 PCGF1Q9BSM1 259 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FICDQ9BVA6 458 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 NMNAT2Q9BZQ4 307 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CATSPERBQ9H7T0 1116 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 UPF2Q9HAU5 1272 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MED4Q9NPJ6 270 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TRNAU1APQ9NX07 287 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 IL20Q9NYY1 176 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CHMP5Q9NZZ3 219 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 PCDHA12Q9UN75 941 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 A0A0U1RRA0 63 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 KANSL1LA0AUZ9 987 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SLC15A5A6NIM6 579 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 OR52A4PA6NMU1 304 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TTC34A8MYJ7 566 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SLC28A1O00337 649 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 NVLO15381 856 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 NDUFS4O43181 175 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 DCXO43602 365 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 PDE9AO76083 593 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 OR6A2O95222 327 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 AGTP01019 485 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MPZP25189 248 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ELAVL4P26378 380 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CYP2C18P33260 490 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 S100A5P33763 92 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 LONP1P36776 959 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CETN2P41208 172 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 LHX1P48742 406 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CXCR3P49682 368 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 HNRNPMP52272 730 aaKnown RBP eCLIP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 RPS8P62241 208 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TUBA4AP68366 448 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 DLK1P80370 383 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ABATP80404 500 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ROR2Q01974 943 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ZSCAN26Q16670 478 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ANKRD55Q3KP44 614 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM119Q4V9L6 283 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 Q5PR19 223 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 PRR27Q6MZM9 219 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF813Q6ZN06 617 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 EFL1Q7Z2Z2 1120 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 DGLUCYQ7Z3D6 616 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM217Q8N7C4 229 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 C12orf76Q8N812 135 aaPredicted RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 CCDC63Q8NA47 563 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 BEST2Q8NFU1 509 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 RAB3IL1Q8TBN0 382 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 RLN3Q8WXF3 142 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ADAMTS14Q8WXS8 1223 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 SNAPC3Q92966 411 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 RPL36ALQ969Q0 106 aaKnown RBP3.92□□□□□ -1.78
HMGB1-204ENST00000399489 KAZALD1Q96I82 304 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 BTBD9Q96Q07 612 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 MYADMQ96S97 322 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FAM192AQ9GZU8 254 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms