RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TFEBP19484 476 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 F8A1P23610 371 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 DNASE1L3Q13609 305 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 FAM83EQ2M2I3 478 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 PTCHD3Q3KNS1 767 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 WASHC2DQ5SRD0 308 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 FAM199XQ6PEV8 388 aaPredicted RBP20.78■□□□□ 0.92
CLN3-207ENST00000395653 ISCA2Q86U28 154 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 KLHDC8AQ8IYD2 350 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 TTC29Q8NA56 475 aaPredicted RBP20.78■□□□□ 0.92
CLN3-207ENST00000395653 OR2A5Q96R48 311 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 GPR87Q9BY21 358 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 CHST8Q9H2A9 424 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 TXLNGQ9NUQ3 528 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 RNF112Q9ULX5 631 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 PCDHGA6Q9Y5G7 932 aa20.78■□□□□ 0.92
CLN3-207ENST00000395653 LOC105369274A0A096LPK9 316 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 LOC102723532A0A0G2JNH3 316 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 HAT1O14929 419 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 KRT37O76014 449 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 SLC6A12P48065 614 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 CSNK1G2P78368 415 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 IRF9Q00978 393 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 THOC6Q86W42 341 aaKnown RBP20.77■□□□□ 0.91
CLN3-207ENST00000395653 OR4N4Q8N0Y3 316 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 CNPY4Q8N129 248 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 PDPRQ8NCN5 879 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 ABHD11Q8NFV4 315 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 KCTD4Q8WVF5 259 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 NXNL1Q96CM4 212 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 GBP5Q96PP8 586 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 ALG9Q9H6U8 611 aa20.77■□□□□ 0.91
CLN3-207ENST00000395653 DHCR7Q9UBM7 475 aaKnown RBP20.77■□□□□ 0.91
CLN3-207ENST00000395653 HEATR5BQ9P2D3 2071 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 NCF1BA6NI72 391 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 ZNF891A8MT65 544 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 NCF1CA8MVU1 366 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 H0YGG7 62 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 KERAO60938 352 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 IPO13O94829 963 aaKnown RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 KLHL2O95198 593 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 SNRPAP09012 282 aaKnown RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 CDH1P12830 882 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 NCF1P14598 390 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 AGXTP21549 392 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 GCAP28676 217 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 GGT5P36269 586 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 ARF3P61204 181 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 FAM214AQ32MH5 1076 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 CRTC2Q53ET0 693 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 LGSNQ5TDP6 509 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 SULT1C3Q6IMI6 304 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 ADGRD1Q6QNK2 874 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 RHEBL1Q8TAI7 183 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 STARD8Q92502 1023 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 RERGQ96A58 199 aaPredicted RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 ATOH8Q96SQ7 321 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 C17orf62Q9BQA9 187 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 CNOT10Q9H9A5 744 aaKnown RBP20.76■□□□□ 0.91
CLN3-207ENST00000395653 STARD5Q9NSY2 213 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 CUTCQ9NTM9 273 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 SLC22A14Q9Y267 594 aa20.76■□□□□ 0.91
CLN3-207ENST00000395653 KCNE1BA0A087WTH5 132 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 TRIM49D1C9J1S8 452 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 EIF2S1P05198 315 aaKnown RBP20.75■□□□□ 0.91
CLN3-207ENST00000395653 RAB40ALP0C0E4 278 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 GRK3P35626 688 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 KCNC1P48547 511 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 CCR8P51685 355 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 EMP3P54852 163 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 RPS15AP62244 130 aaKnown RBP20.75■□□□□ 0.91
CLN3-207ENST00000395653 VSNL1P62760 191 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 RPS15P62841 145 aaKnown RBP20.75■□□□□ 0.91
CLN3-207ENST00000395653 DCDP81605 110 aaKnown RBP20.75■□□□□ 0.91
CLN3-207ENST00000395653 MC1RQ01726 317 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 ACAP2Q15057 778 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 LCN10Q6JVE6 187 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 WDR93Q6P2C0 686 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 PLD3Q8IV08 490 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 OR4K1Q8NGD4 311 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 SLC5A11Q8WWX8 675 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 THAP11Q96EK4 314 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 CCDC77Q9BR77 488 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 TMEM79Q9BSE2 394 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 VPS11Q9H270 941 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 SYNPO2LQ9H987 977 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 WWOXQ9NZC7 414 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 NUDT4Q9NZJ9 180 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 CD274Q9NZQ7 290 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 DYRK1BQ9Y463 629 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 KCNE2Q9Y6J6 123 aa20.75■□□□□ 0.91
CLN3-207ENST00000395653 NBEAQ8NFP9 2946 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 A0A1B0GX78 115 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 HYKKA2RU49 373 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 TXNDC9O14530 226 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 TAPBPO15533 448 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 S100BP04271 92 aaPredicted RBP20.74■□□□□ 0.91
CLN3-207ENST00000395653 CAPN1P07384 714 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 PRTGQ2VWP7 1150 aa20.74■□□□□ 0.91
CLN3-207ENST00000395653 C1orf189Q5VU69 101 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms