RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TGFBIQ15582 683 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 RBBP7Q16576 425 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 MMEL1Q495T6 779 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 REP15Q6BDI9 236 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 FRA10AC1Q70Z53 315 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 DHDDSQ86SQ9 333 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 SYVN1Q86TM6 617 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 SLC22A15Q8IZD6 547 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 PHC3Q8NDX5 983 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 HGH1Q9BTY7 390 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 SLC25A23Q9BV35 468 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 OR52A5Q9H2C5 316 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 CPNE7Q9UBL6 633 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 POLG2Q9UHN1 485 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 PLEKHM1Q9Y4G2 1056 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 LY6G6EA0A0G2JKS1 128 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 RHPN2P1A8MT19 583 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 B4DGG1 531 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 E2F3O00716 465 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 FBP2O00757 339 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 KCNK5O95279 499 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 VIPP01282 170 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 LINC00032P0C843 101 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 UROSP10746 265 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 GPX3P22352 226 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 ME2P23368 584 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 RGS4P49798 205 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 PSME3P61289 254 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 UBE2IP63279 158 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 HHEXQ03014 270 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 KLHL35Q6PF15 583 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 PAOXQ6QHF9 649 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 SBSNQ6UWP8 590 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 UNC5DQ6UXZ4 953 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 GPRIN3Q6ZVF9 776 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 EFL1Q7Z2Z2 1120 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 PDZD3Q86UT5 571 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TRIM48Q8IWZ4 208 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TBC1D21Q8IYX1 336 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 OR9I1Q8NGQ6 314 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 LKAAEAR1Q8TD35 194 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 SLC37A2Q8TED4 501 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 NAT14Q8WUY8 206 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TUBGCP3Q96CW5 907 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 CXorf40BQ96DE9 158 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 FOPNLQ96NB1 174 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 ZNF184Q99676 751 aaPredicted RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 LRIT1Q9P2V4 623 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 GIMAP2Q9UG22 337 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 BCAP29Q9UHQ4 241 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 BTRCQ9Y297 605 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 ASB1Q9Y576 335 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 U3KQA8 63 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 RALGAPA1Q6GYQ0 2036 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 KNL1Q8NG31 2342 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 LILRA5A6NI73 299 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 GIPC1O14908 333 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 NRP2O60462 931 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 RFPL3O75679 317 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 CHEK2O96017 543 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 S100BP04271 92 aaPredicted RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 MTHFD1P11586 935 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 LBPP18428 481 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 ITGB6P18564 788 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 RPL10P27635 214 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 ACADLP28330 430 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 PBLDP30039 288 aaPredicted RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 PRDX3P30048 256 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 NOVA1P51513 510 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 CLNS1AP54105 237 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 HSPA14Q0VDF9 509 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 FLOT2Q14254 428 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 GRB7Q14451 532 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 RPE65Q16518 533 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 PLA2G4EQ3MJ16 856 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TTC23LQ6PF05 361 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 FAM83HQ6ZRV2 1179 aaPredicted RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 KBTBD2Q8IY47 623 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 MYO1HQ8N1T3 1032 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 MIER2Q8N344 545 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 ZBTB2Q8N680 514 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 SNX31Q8N9S9 440 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 DEFB124Q8NES8 71 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TFGQ92734 400 aaPredicted RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 CAMK1GQ96NX5 476 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 ZNF382Q96SR6 550 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TSR3Q9UJK0 312 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 ZNF225Q9UK10 706 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TIMM22Q9Y584 194 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 PCDHGA7Q9Y5G6 932 aa9.86□□□□□ -0.83
VPS53-202ENST00000389040 TNPO3Q9Y5L0 923 aaKnown RBP9.86□□□□□ -0.83
VPS53-202ENST00000389040 FAM221BA6H8Z2 402 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 BBIP1A8MTZ0 92 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 VGLL3A8MV65 326 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 H3BNX3 289 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 TMX2-CTNND1H3BSU7 103 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 MRASO14807 208 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 HGFP14210 728 aa9.85□□□□□ -0.83
VPS53-202ENST00000389040 IDO1P14902 403 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms