RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GMNNO75496 209 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 AP2A2O94973 939 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CYP17A1P05093 508 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 HLA-EP13747 358 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 KIR3DL1P43629 444 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 SLC6A11P48066 632 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ZCCHC8Q6NZY4 707 aaKnown RBP12.93□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM220Q6QAJ8 160 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 R3HCC1LQ7Z5L2 792 aaKnown RBP12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CYP4Z1Q86W10 505 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 SYT12Q8IV01 421 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ZFYVE19Q96K21 471 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 DCUN1D5Q9BTE7 237 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ZSCAN5AQ9BUG6 496 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 PAK1IP1Q9NWT1 392 aaPredicted RBP12.93□□□□□ -0.34
CCDC3-202ENST00000378839 USE1Q9NZ43 259 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 MARK1Q9P0L2 795 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 VPS29Q9UBQ0 182 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 TMED5Q9Y3A6 229 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 GABRR3A8MPY1 467 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM229AB2RXF0 380 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 FPGTO14772 594 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 KLHL18O94889 574 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 HPRP00739 348 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 SEMG1P04279 462 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CRHBPP24387 322 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 PRLHRP49683 370 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 VAC14Q08AM6 782 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 DMC1Q14565 340 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ACOX1Q15067 660 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 DUOXA1Q1HG43 343 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 DPY19L1Q2PZI1 675 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CATSPEREQ5SY80 951 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 LIPJQ5W064 366 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 LAIR1Q6GTX8 287 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CHDHQ8NE62 594 aaPredicted RBP12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CDC26Q8NHZ8 85 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 NEIL2Q969S2 332 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 SH3KBP1Q96B97 665 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 AP2M1Q96CW1 435 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 IL23AQ9NPF7 189 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF232Q9UNY5 417 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 BOLA2-SMG1P6H3BVE0 249 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 CLIC1O00299 241 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 FTH1P02794 183 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 VIPR2P41587 438 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 MAGEA2P43356 314 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ABHD18Q0P651 414 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM259Q4ZIN3 620 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ZCCHC7Q8N3Z6 543 aaKnown RBP12.93□□□□□ -0.34
CCDC3-202ENST00000378839 LEMD2Q8NC56 503 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 TANKQ92844 425 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 VPS35Q96QK1 796 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 PANX1Q96RD7 426 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 DOK1Q99704 481 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 MYOCQ99972 504 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 RMND5AQ9H871 391 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 ZDHHC4Q9NPG8 344 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 AASDHPPTQ9NRN7 309 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 EFCAB14O75071 495 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CPSF4O95639 269 aaKnown RBP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CPNE6O95741 557 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 DCKP27707 260 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CD47Q08722 323 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 PRSS53Q2L4Q9 553 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 FGD3Q5JSP0 725 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CPZQ66K79 652 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 GALNT5Q7Z7M9 940 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 NLRP8Q86W28 1048 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 DCP2Q8IU60 420 aaKnown RBP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 C1orf52Q8N6N3 182 aaKnown RBP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 OR56A3Q8NH54 315 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 HUS1BQ8NHY5 278 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF707Q96C28 371 aaPredicted RBP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 HSPBAP1Q96EW2 488 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CCM2Q9BSQ5 444 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 SPNS1Q9H2V7 528 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 MAGIXQ9H6Y5 334 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 FANCEQ9HB96 536 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 SGK2Q9HBY8 427 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 TCF20Q9UGU0 1960 aaKnown RBP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CFAP99D6REC4 459 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 H0YIV9 168 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 GNGT2O14610 69 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 HS6ST1O60243 411 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF682O95780 498 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 GBAP04062 536 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 ELFN1P0C7U0 828 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 PRPS1L1P21108 318 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 DDX6P26196 483 aaKnown RBP eCLIP12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CTNNB1P35222 781 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 BMPR1AP36894 532 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 CASP9P55211 416 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 ISL1P61371 349 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 VLDLRP98155 873 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 GAB1Q13480 694 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 HKDC1Q2TB90 917 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF385BQ569K4 471 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 GRHL2Q6ISB3 625 aa12.92□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF621Q6ZSS3 439 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms