RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 MPP4Q96JB8 637 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 FAR2Q96K12 515 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 BTN2A3PQ96KV6 586 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 SPATA17Q96L03 361 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 CEP295NLQ96MC4 621 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 ZNF599Q96NL3 588 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 OR52B2Q96RD2 323 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 MRPL57Q9BQC6 102 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 MESP1Q9BRJ9 268 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 RTKNQ9BST9 563 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 THTPAQ9BU02 230 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 TRIM54Q9BYV2 358 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 WDR12Q9GZL7 423 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 TRPV6Q9H1D0 765 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 MFSD1Q9H3U5 465 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 RETREG1Q9H6L5 497 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 ELAC1Q9H777 363 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 COG4Q9H9E3 785 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.72□□□□□ -1.65
USP48-202ENST00000374730 TMEM161AQ9NX61 479 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 NDE1Q9NXR1 346 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 FBXO5Q9UKT4 447 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 RIMKLBQ9ULI2 386 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 CORO1CQ9ULV4 474 aaPredicted RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 PRPF19Q9UMS4 504 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 ARHGAP26Q9UNA1 814 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 MAGED2Q9UNF1 606 aaPredicted RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 RUVBL2Q9Y230 463 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 OBSL1O75147 1896 aa4.72□□□□□ -1.65
USP48-202ENST00000374730 ZNF106Q9H2Y7 1883 aaKnown RBP4.72□□□□□ -1.65
USP48-202ENST00000374730 SCN8AQ9UQD0 1980 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 LOC285095A0A1B0GVY8 99 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 TRPC5OSA6NMA1 111 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 GOLGA8TH3BQL2 631 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 GRID2O43424 1007 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 DCXO43602 365 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 TBC1D4O60343 1298 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 TADA2AO75478 443 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 UBXN7O94888 489 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 VAPBO95292 243 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 EPOP01588 193 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FGF1P05230 155 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 CHRNGP07510 517 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 F7P08709 466 aaPredicted RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 RBP1P09455 135 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 PRR35P0CG20 571 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 THRAP10827 490 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 HAPLN1P10915 354 aaPredicted RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 ANPEPP15144 967 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ENGP17813 658 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 RPL17P18621 184 aaKnown RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 HLA-DPA1P20036 260 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 PIK3R1P27986 724 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 HTR1BP28222 390 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 PPARGP37231 505 aaPredicted RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 AVPR1AP37288 418 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 OR1G1P47890 313 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 SLC12A2P55011 1212 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 MTTPP55157 894 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 XIAPP98170 497 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 KLC1Q07866 573 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 SLC10A7Q0GE19 358 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 GALNT1Q10472 559 aaPredicted RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 ELAVL2Q12926 359 aaKnown RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 DLG1Q12959 904 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 GPR17Q13304 367 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 CTBP1Q13363 440 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 CUL3Q13618 768 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 RFTN1Q14699 578 aaPredicted RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 PSMD5Q16401 504 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 GSTA3Q16772 222 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FAM83EQ2M2I3 478 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 MGAT5BQ3V5L5 792 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 CTXN3Q4LDR2 81 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ARL13AQ5H913 290 aaPredicted RBP4.71□□□□□ -1.66
USP48-202ENST00000374730 MARC1Q5VT66 337 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 PRAMEF17Q5VTA0 474 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ZNF425Q6IV72 752 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ANO7Q6IWH7 933 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FAM45BPQ6NSW5 357 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FBXL22Q6P050 247 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 MZT2AQ6P582 158 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 C16orf89Q6UX73 402 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ZNF66Q6ZN08 573 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 CCDC149Q6ZUS6 474 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 CEP97Q8IW35 865 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 SLC15A3Q8IY34 581 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FBXW8Q8N3Y1 598 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 KDM1BQ8NB78 822 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FAM156AQ8NDB6 213 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 TET1Q8NFU7 2136 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 OR13J1Q8NGT2 312 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ARRDC2Q8TBH0 407 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FAM45AQ8TCE6 357 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 HEXDCQ8WVB3 486 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FBXO32Q969P5 355 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 ELMO2Q96JJ3 720 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 FEM1CQ96JP0 617 aa4.71□□□□□ -1.66
USP48-202ENST00000374730 MAELQ96JY0 434 aaKnown RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms