RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SP140Q13342 867 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 RBBP7Q16576 425 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 HKDC1Q2TB90 917 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 TEDDM1Q5T9Z0 273 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 GARNL3Q5VVW2 1013 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 ADCK2Q7Z695 626 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 ARHGEF39Q8N4T4 335 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 GALNT11Q8NCW6 608 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 RERGQ96A58 199 aaPredicted RBP20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 MIEF2Q96C03 454 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 LRRC39Q96DD0 335 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 WDR83Q9BRX9 315 aaKnown RBP20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 TRIM51Q9BSJ1 452 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 PARVBQ9HBI1 364 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 SLAMF7Q9NQ25 335 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 CCDC177Q9NQR7 707 aaPredicted RBP20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 LUZP4Q9P127 313 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 PYCARDQ9ULZ3 195 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 CHMP2BQ9UQN3 213 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 TEX264Q9Y6I9 313 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 H7BY64 318 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 TXNDC9O14530 226 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 HAT1O14929 419 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 VPS4BO75351 444 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 FBLP22087 321 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 HRH2P25021 359 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 ITGA8P53708 1063 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 TBPL1P62380 186 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 KLC1Q07866 573 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 DSG2Q14126 1118 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 INPP5JQ15735 1006 aaPredicted RBP20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 TUBB8Q3ZCM7 444 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 HP1BP3Q5SSJ5 553 aaPredicted RBP20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 PRAMEF13Q5VWM6 474 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 STEAP4Q687X5 459 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 PALM2Q8IXS6 379 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 MYO1HQ8N1T3 1032 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 CFAP36Q96G28 342 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 VPS50Q96JG6 964 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 PRAP1Q96NZ9 151 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 CRB3Q9BUF7 120 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 PPANQ9NQ55 473 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 TMEM184CQ9NVA4 438 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 SLC17A6Q9P2U8 582 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 VPS4AQ9UN37 437 aa20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 MDC1Q14676 2089 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-201ENST00000373602 TTI1O43156 1089 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 PRPF4O43172 522 aaKnown RBP eCLIP20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 ALOX12BO75342 701 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 SEC31AO94979 1220 aaKnown RBP20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 ITGA3P26006 1051 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 PAFAH1B1P43034 410 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 SRSF1Q07955 248 aaKnown RBP eCLIP20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 FRG1Q14331 258 aaKnown RBP20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 HIF1AQ16665 826 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 VWA2Q5GFL6 755 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 TRMT10BQ6PF06 316 aaKnown RBP20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 PLD3Q8IV08 490 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 OR11G2Q8NGC1 345 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 LINGO1Q96FE5 620 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 PCBD2Q9H0N5 130 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 RNF14Q9UBS8 474 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 C3orf18Q9UK00 162 aa20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 CORO1CQ9ULV4 474 aaPredicted RBP20.65■□□□□ 0.9
CCDC28B-201ENST00000373602 TP73O15350 636 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 P2RX6O15547 441 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 TSPAN12O95859 305 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 FDXRP22570 491 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 SLC26A3P40879 764 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 ARL4CP56559 192 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 PHKG1Q16816 387 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 PLEKHN1Q494U1 663 aaPredicted RBP20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 PRR30Q53SZ7 412 aaPredicted RBP20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 HECTD2Q5U5R9 776 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 AGTRAPQ6RW13 159 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 MBOAT1Q6ZNC8 495 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 PRSS58Q8IYP2 241 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 FAM26EQ8N5C1 309 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 AMER3Q8N944 861 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 TM9SF4Q92544 642 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 SNF8Q96H20 258 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 ZBTB20Q9HC78 741 aaPredicted RBP20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 B3GNT3Q9Y2A9 372 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 VWA7Q9Y334 891 aa20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 SPENQ96T58 3664 aaKnown RBP20.64■□□□□ 0.89
CCDC28B-201ENST00000373602 KCNE1BA0A087WTH5 132 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 FANCGO15287 622 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 FOXS1O43638 330 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 VARSP26640 1264 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 UQCRFS1P47985 274 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 IL2P60568 153 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 PDAP1Q13442 181 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 FAM53BQ14153 422 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 ATG9BQ674R7 924 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 LAPTM4BQ86VI4 370 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 GPATCH11Q8N954 259 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 MMABQ96EY8 250 aaPredicted RBP20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 MESP1Q9BRJ9 268 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 TRIM31Q9BZY9 425 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 DRC3Q9H069 523 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms