RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 EPHA6Q9UF33 1036 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 PISDQ9UG56 409 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 CLCA1A8K7I4 914 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 ERAL1O75616 437 aaKnown RBP8.43□□□□□ -1.06
SYNE1-206ENST00000367253 FHP07954 510 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 MNDAP41218 407 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 HNF4AP41235 474 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 NFKB2Q00653 900 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 DLG2Q15700 870 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 FAM187BQ17R55 369 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 KLHDC7AQ5VTJ3 777 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 FAM92BQ6ZTR7 304 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 FBXL16Q8N461 479 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 LINC00469Q8N7U9 141 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 AUTS2Q8WXX7 1259 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 RAB39BQ96DA2 213 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 TMCO6Q96DC7 493 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 PTCHD1Q96NR3 888 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 GDAP2Q9NXN4 497 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 EIF3KQ9UBQ5 218 aaKnown RBP8.43□□□□□ -1.06
SYNE1-206ENST00000367253 PCDHGB7Q9Y5F8 929 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-206ENST00000367253 TRIM38O00635 465 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 RGS14O43566 566 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 IFNA6P05013 189 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 CXCR3P49682 368 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 CLCN7P51798 805 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 RABGGTBP53611 331 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 VSX2P58304 361 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-206ENST00000367253 AP3S2P59780 193 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 SLC6A3Q01959 620 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 RUNX2Q13950 521 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 RRP1BQ14684 758 aaKnown RBP8.43□□□□□ -1.06
SYNE1-206ENST00000367253 TMEM35AQ53FP2 167 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 FOXR2Q6PJQ5 311 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 GALNTL5Q7Z4T8 443 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 MILR1Q7Z6M3 343 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 DNAAF1Q8NEP3 725 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 SPATA20Q8TB22 786 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 TMEM27Q9HBJ8 222 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 ARMC1Q9NVT9 282 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 DHRS7Q9Y394 339 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 CAPN6Q9Y6Q1 641 aa8.43□□□□□ -1.06
SYNE1-206ENST00000367253 DCLK1O15075 740 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 SHOXO15266 292 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ADAMTS4O75173 837 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 REM1O75628 298 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 FUT2Q10981 343 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 IL18Q14116 193 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MED22Q15528 200 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MAPK14Q16539 360 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 C4orf46Q504U0 113 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 C19orf35Q6ZS72 473 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MMAAQ8IVH4 418 aaKnown RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 SLC35F3Q8IY50 421 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 CFAP52Q8N1V2 620 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PCDH20Q8N6Y1 951 aaKnown RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 FAM47BQ8NA70 645 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PAPD5Q8NDF8 572 aaKnown RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 OR52K2Q8NGK3 314 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 KAT2AQ92830 837 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MUCL1Q96DR8 90 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ITPKCQ96DU7 683 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 NUS1Q96E22 293 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ARNT2Q9HBZ2 717 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PTPRHQ9HD43 1115 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 HS3ST4Q9Y661 456 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 AK9Q5TCS8 1911 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PEX11AO75192 247 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 GLAP06280 429 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 IQCF3P0C7M6 154 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 BMP7P18075 431 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 S100A3P33764 101 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MRPS21P82921 87 aaKnown RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 BNIP2Q12982 314 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ZBTB6Q15916 424 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ZNF423Q2M1K9 1284 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 FAM111BQ6SJ93 734 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 DTX3Q8N9I9 347 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ZNF461Q8TAF7 563 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ST8SIA2Q92186 375 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 KAT2BQ92831 832 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 DIRAS2Q96HU8 199 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 ITCHQ96J02 903 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 CCNL2Q96S94 520 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 SLC4A5Q9BY07 1137 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MAGEH1Q9H213 219 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PLK2Q9NYY3 685 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 TMEM216Q9P0N5 145 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PLEKHA6Q9Y2H5 1048 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-206ENST00000367253 FANCGO15287 622 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 YY2O15391 372 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 IFNGP01579 166 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 PRH1P02810 166 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 FGF1P05230 155 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 KLRK1P26718 216 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 DNASE1L1P49184 302 aa8.42□□□□□ -1.06
SYNE1-206ENST00000367253 MECP2P51608 486 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms