RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CA5BP1Q8WTZ4 195 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 RERGQ96A58 199 aaPredicted RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 CALR3Q96L12 384 aaKnown RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 DPH7Q9BTV6 452 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 DRC3Q9H069 523 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 ANAPC5Q9UJX4 755 aa13.12□□□□□ -0.31
VPS29-201ENST00000360579 RUVBL1Q9Y265 456 aaKnown RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 NCOA6Q14686 2063 aaPredicted RBP13.12□□□□□ -0.31
VPS29-201ENST00000360579 NIPBLQ6KC79 2804 aaeCLIP13.11□□□□□ -0.31
VPS29-201ENST00000360579 CPAMD8Q8IZJ3 1885 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 A0A1W2PPV9 198 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 GOLGA6L9A6NEM1 432 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 ERI2A8K979 691 aaKnown RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 IQCF5A8MTL0 148 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 NPIPA5E9PKD4 350 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 E9PLN8 166 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 PRMT5O14744 637 aaPredicted RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 FFAR3O14843 346 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 GPR42O15529 346 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 NRP2O60462 931 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 PTMAP06454 111 aaKnown RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 ANP32AP39687 249 aaKnown RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 BDKRB1P46663 353 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 TTPAP49638 278 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 RWDD2BP57060 319 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 CSNK1G2P78368 415 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 PRAMEP78395 509 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 FAM53BQ14153 422 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 MEP1AQ16819 746 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 ACER2Q5QJU3 275 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 TSTD2Q5T7W7 516 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 PTRHD1Q6GMV3 140 aaKnown RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 OTOAQ7RTW8 1153 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 ZC3H7AQ8IWR0 971 aaKnown RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 BEST3Q8N1M1 668 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 GHDCQ8N2G8 530 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 HORMAD2Q8N7B1 307 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 LKAAEAR1Q8TD35 194 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 PEX13Q92968 403 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 TREX2Q9BQ50 279 aaPredicted RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 VKORC1Q9BQB6 163 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 PLCD4Q9BRC7 762 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 UTP23Q9BRU9 249 aaKnown RBP13.11□□□□□ -0.31
VPS29-201ENST00000360579 COQ3Q9NZJ6 369 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 NPIPA1Q9UND3 350 aa13.11□□□□□ -0.31
VPS29-201ENST00000360579 FOXO6A8MYZ6 492 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 CDK2AP1O14519 115 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 PRRG2O14669 202 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 WISP2O76076 250 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 SUN1O94901 812 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 TSPAN12O95859 305 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 ADRA1DP25100 572 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 AVPR1BP47901 424 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 ACVR1Q04771 509 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 TUBA3CQ13748 450 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 OR1C1Q15619 314 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 NDUFA9Q16795 377 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 HKDC1Q2TB90 917 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 BTBD16Q32M84 506 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 H3F3CQ6NXT2 135 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 LRRC8BQ6P9F7 803 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 TUBA3EQ6PEY2 450 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 ZNF534Q76KX8 674 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 CPEB2Q7Z5Q1 589 aaKnown RBP13.1□□□□□ -0.31
VPS29-201ENST00000360579 VSTM4Q8IW00 320 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 KRT222Q8N1A0 295 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 MDS2Q8NDY4 140 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 OR52K1Q8NGK4 314 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 AGAP11Q8TF27 550 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 SCMH1Q96GD3 660 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 MRPS30Q9NP92 439 aaKnown RBP13.1□□□□□ -0.31
VPS29-201ENST00000360579 KLHL1Q9NR64 748 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 SLC2A6Q9UGQ3 507 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 GNPTGQ9UJJ9 305 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 NEU2Q9Y3R4 380 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 NFS1Q9Y697 457 aa13.1□□□□□ -0.31
VPS29-201ENST00000360579 A0A0A6YYC8 382 aaPredicted RBP13.09□□□□□ -0.31
VPS29-201ENST00000360579 I3L1I5 382 aaPredicted RBP13.09□□□□□ -0.31
VPS29-201ENST00000360579 FOXS1O43638 330 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 ASNA1O43681 348 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 DIAPH2O60879 1101 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 SEC24DO94855 1032 aaPredicted RBP13.09□□□□□ -0.31
VPS29-201ENST00000360579 CCNDBP1O95273 360 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 EZRP15311 586 aaKnown RBP13.09□□□□□ -0.31
VPS29-201ENST00000360579 RPA3P35244 121 aaPredicted RBP13.09□□□□□ -0.31
VPS29-201ENST00000360579 RELAQ04206 551 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 EXT1Q16394 746 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 CCSMST1Q4G0I0 132 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 PAQR7Q86WK9 346 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 LRRC6Q86X45 466 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 SMPDL3AQ92484 453 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 SDCCAG3Q96C92 435 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 FRMD6Q96NE9 622 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 SIGLEC12Q96PQ1 595 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 OR2A5Q96R48 311 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 CYTH2Q99418 400 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 ACAT2Q9BWD1 397 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 VN1R1Q9GZP7 353 aa13.09□□□□□ -0.31
VPS29-201ENST00000360579 TSPAN10Q9H1Z9 355 aaPredicted RBP13.09□□□□□ -0.31
VPS29-201ENST00000360579 KCNK13Q9HB14 408 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms