RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TLE6Q9H808 572 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 SOHLH2Q9NX45 425 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF69Q9UC07 566 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 MRPS33Q9Y291 106 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 GMPRP36959 345 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 ARCN1P48444 511 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 HNRNPA0Q13151 305 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 SYVN1Q86TM6 617 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 C1orf52Q8N6N3 182 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 OR6K6Q8NGW6 343 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 MOCS1Q9NZB8 636 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 PPIEQ9UNP9 301 aaKnown RBP19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 PDCD5O14737 125 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 PRH1P02810 166 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 CBX5P45973 191 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 AVPR1BP47901 424 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 DNASE1L1P49184 302 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 ALG11Q2TAA5 492 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 XKRXQ6PP77 449 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 TMC8Q8IU68 726 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 NKD1Q969G9 470 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 LRCH3Q96II8 777 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 TMEM106CQ9BVX2 250 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 CDADC1Q9BWV3 514 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 ENAMQ9NRM1 1142 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 GALNT2Q10471 571 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 GRB7Q14451 532 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 PLEKHG7Q6ZR37 379 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 CAMK1GQ96NX5 476 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 ZSCAN5AQ9BUG6 496 aa19.02■□□□□ 0.63
CCDC88B-202ENST00000356786 TRAV6A0A075B6T7 132 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 PRORSD1PA6NEY8 169 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 NEDD8-MDP1E9PL57 170 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 PROZP22891 400 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 HMBOX1Q6NT76 420 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 SNX20Q7Z614 316 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 ARMC10Q8N2F6 343 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 ABHD11Q8NFV4 315 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 FATE1Q969F0 183 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 ALPK1Q96QP1 1244 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 HERPUD2Q9BSE4 406 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 NSUN3Q9H649 340 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 BRD7Q9NPI1 651 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 STOX2Q9P2F5 926 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 MAB21L2Q9Y586 359 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 H7C2Y5 167 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 J3KR12 359 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 M0R233 179 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 PLD2O14939 933 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 CD2P06729 351 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 CDK4P11802 303 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 SMSP52788 366 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 CREB5Q02930 508 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 GOLGA7Q7Z5G4 137 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 DNAJB7Q7Z6W7 309 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF598Q86UK7 904 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 FCRL3Q96P31 734 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 C5orf51A6NDU8 294 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 GRM6O15303 877 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 SNNO75324 88 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 PHYKPLQ8IUZ5 450 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 TIGD4Q8IY51 512 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 TCEANCQ8N8B7 351 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 DERL2Q9GZP9 239 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 COMMD4Q9H0A8 199 aa19.01■□□□□ 0.63
CCDC88B-202ENST00000356786 TEX28O15482 410 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 ONECUT3O60422 494 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 SORBS2O94875 1100 aaKnown RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 APOL3O95236 402 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 MAN2A2P49641 1150 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 BMXP51813 675 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 PPP5CP53041 499 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 PGGT1BP53609 377 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 TCEAL5Q5H9L2 206 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 PRAMEF17Q5VTA0 474 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC30A8Q8IWU4 369 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 INO80EQ8NBZ0 244 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 C2CD4AQ8NCU7 369 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 MS4A12Q9NXJ0 267 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC22A14Q9Y267 594 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 METTL21EPA6NDL7 271 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 CH25HO95992 272 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 TGFB1P01137 390 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 HTR1EP28566 365 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 GBX2P52951 348 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 MS4A2Q01362 244 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 CCSAPQ6IQ19 270 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 TMEM80Q96HE8 168 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 HCN4Q9Y3Q4 1203 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 IL7P13232 177 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 TMEM220Q6QAJ8 160 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 PIAS4Q8N2W9 510 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 SPERTQ8NA61 448 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 PADI3Q9ULW8 664 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 MANBAO00462 879 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 GM2AP17900 193 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 RPS24P62847 133 aaKnown RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 CLDN19Q8N6F1 224 aa19■□□□□ 0.63
CCDC88B-202ENST00000356786 TRIM43Q96BQ3 446 aaPredicted RBP19■□□□□ 0.63
CCDC88B-202ENST00000356786 HEPHQ9BQS7 1158 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms