RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 UNKQ9C0B0 810 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 STMN4Q9H169 189 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 LINC00597Q9H2U6 94 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CATSPERBQ9H7T0 1116 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 S100A14Q9HCY8 104 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 NT5MQ9NPB1 228 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 IL23AQ9NPF7 189 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FARSBQ9NSD9 589 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 AIG1Q9NVV5 245 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SPATA6Q9NWH7 488 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 COX16Q9P0S2 106 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DHRS7Q9Y394 339 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TEX51A0A1B0GUA7 166 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SLC5A10A0PJK1 596 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HEATR9A2RTY3 570 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 E7ENX8 843 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 K7ESM1 405 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GRM6O15303 877 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HOXC11O43248 304 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 TIMM44O43615 452 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TRIM13O60858 407 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NIPSNAP2O75323 286 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PSIP1O75475 530 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 CLDN11O75508 207 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 EEDO75530 441 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 KIAA0754O94854 1291 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 INHBBP09529 407 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PIRTP0C851 137 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GAAP10253 952 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ANPEPP15144 967 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HLA-DPA1P20036 260 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SERPINB6P35237 376 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 POLR2IP36954 125 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 MMP12P39900 470 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RPL14P50914 215 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 ADAM8P78325 824 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 IFFO1Q0D2I5 559 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CDC16Q13042 620 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 STX3Q13277 289 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NFATC2Q13469 925 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GEN1Q17RS7 908 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MST1LQ2TV78 715 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CCSMST1Q4G0I0 132 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GGTA1PQ4G0N0 100 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GLIPR1L2Q4G1C9 344 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MPPE1Q53F39 396 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ODF2Q5BJF6 829 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 COQ5Q5HYK3 327 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PRR31Q5SQ13 230 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 C9orf50Q5SZB4 431 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ICE2Q659A1 982 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZNF470Q6ECI4 717 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CLEC6AQ6EIG7 209 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 NEPROQ6NW34 567 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 GLB1LQ6UWU2 654 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LINGO4Q6UY18 593 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 DBX2Q6ZNG2 339 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CAMKMTQ7Z624 323 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 CUZD1Q86UP6 607 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 HEATR5AQ86XA9 2040 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 DCP1BQ8IZD4 617 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 DSELQ8IZU8 1212 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LGI2Q8N0V4 545 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MINDY1Q8N5J2 469 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 L3MBTL4Q8NA19 623 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TDRD5Q8NAT2 981 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 SIDT2Q8NBJ9 832 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 OR4L1Q8NH43 312 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 IFI44Q8TCB0 444 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FBXO32Q969P5 355 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 FAM149B1Q96BN6 582 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TBC1D20Q96BZ9 403 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SCRN2Q96FV2 425 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SLC35A4Q96G79 324 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MSLNLQ96KJ4 702 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 RPL10LQ96L21 214 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 MARK4Q96L34 752 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 DOK1Q99704 481 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 SLC29A1Q99808 456 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 C17orf80Q9BSJ5 609 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MED10Q9BTT4 135 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 PAIP1Q9H074 479 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 IQCGQ9H095 443 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 SPNS1Q9H2V7 528 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 AGPAT4Q9NRZ5 378 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 C20orf96Q9NUD7 363 aaPredicted RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 OLAHQ9NV23 265 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ARMC1Q9NVT9 282 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 TMEM45AQ9NWC5 275 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 VNN3Q9NY84 501 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 UTP6Q9NYH9 597 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 ABT1Q9ULW3 272 aaKnown RBP2.24□□□□□ -2.05
VPS54-202ENST00000354504 MAN2B2Q9Y2E5 1009 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 BTBD3Q9Y2F9 522 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 ZNF711Q9Y462 761 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 OARD1Q9Y530 152 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PCDHB7Q9Y5E2 793 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 PCDHGB2Q9Y5G2 931 aa2.24□□□□□ -2.05
VPS54-202ENST00000354504 MYO9BQ13459 2157 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms