RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 IL23AQ9NPF7 189 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 SPATA6Q9NWH7 488 aaPredicted RBP18.73■□□□□ 0.59
COL9A3-201ENST00000343916 SLC5A10A0PJK1 596 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 EVPLLA8MZ36 301 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 K7ESM1 405 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 NPC1O15118 1278 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 DGKGP49619 791 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 MAPK10P53779 464 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 CSTF3Q12996 717 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 KCNC3Q14003 757 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 MEP1AQ16819 746 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 PRSS36Q5K4E3 855 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 LDLRAP1Q5SW96 308 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 TMEM26Q6ZUK4 368 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 SVOPLQ8N434 492 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 ZNF557Q8N988 423 aaPredicted RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 GPR156Q8NFN8 814 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 FCRL1Q96LA6 429 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 CCDC138Q96M89 665 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 SAMD11Q96NU1 681 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 RBM4BQ9BQ04 359 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 CCM2Q9BSQ5 444 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 RBM4Q9BWF3 364 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 EXD2Q9NVH0 621 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 ABCG2Q9UNQ0 655 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 PLK4O00444 970 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 UGDHO60701 494 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 RECQL5O94762 991 aaPredicted RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 DIRAS1O95057 198 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 ATE1O95260 518 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 CATP04040 527 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 HLA-EP13747 358 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 ENTPD1P49961 510 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 TPD52P55327 224 aaPredicted RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 R3HCC1LQ7Z5L2 792 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 ZDHHC21Q8IVQ6 265 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 CHPFQ8IZ52 775 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 C1orf52Q8N6N3 182 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 VN1R2Q8NFZ6 395 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 SH3KBP1Q96B97 665 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 FAM210AQ96ND0 272 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 BARD1Q99728 777 aaKnown RBP18.72■□□□□ 0.59
COL9A3-201ENST00000343916 MAGIXQ9H6Y5 334 aa18.72■□□□□ 0.59
COL9A3-201ENST00000343916 SERTM1A2A2V5 107 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 FOXD2O60548 495 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-201ENST00000343916 CYP17A1P05093 508 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 PJA1Q8NG27 643 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 OR5K1Q8NHB7 308 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 SPPL3Q8TCT6 385 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 LZICQ8WZA0 190 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 GLMNQ92990 594 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 NEIL2Q969S2 332 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 MARK1Q9P0L2 795 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 TDRKHQ9Y2W6 561 aaKnown RBP18.71■□□□□ 0.59
COL9A3-201ENST00000343916 RANBP2P49792 3224 aaKnown RBP18.71■□□□□ 0.59
COL9A3-201ENST00000343916 CHD9Q3L8U1 2897 aa18.71■□□□□ 0.59
COL9A3-201ENST00000343916 EPN2O95208 641 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 CCNDBP1O95273 360 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 KCNK5O95279 499 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 FGF19O95750 216 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 BMPR1AP36894 532 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 GJA8P48165 433 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 RAE1P78406 368 aaKnown RBP18.71■□□□□ 0.58
COL9A3-201ENST00000343916 HKDC1Q2TB90 917 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 CTU2Q2VPK5 515 aaKnown RBP18.71■□□□□ 0.58
COL9A3-201ENST00000343916 TTC23Q5W5X9 447 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 GRHL2Q6ISB3 625 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 VTCN1Q7Z7D3 282 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 ZNF555Q8NEP9 628 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 HUS1BQ8NHY5 278 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 C11orf24Q96F05 449 aaPredicted RBP18.71■□□□□ 0.58
COL9A3-201ENST00000343916 VPS35Q96QK1 796 aa18.71■□□□□ 0.58
COL9A3-201ENST00000343916 YTHDF1Q9BYJ9 559 aaKnown RBP18.71■□□□□ 0.58
COL9A3-201ENST00000343916 H0YIV9 168 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 H3BMQ9 156 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 hCG_2039718K7EN88 272 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 MITFO75030 526 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-201ENST00000343916 HNRNPCP07910 306 aaKnown RBP eCLIP18.7■□□□□ 0.581e-8■■■□□ 15.9
COL9A3-201ENST00000343916 CISD3P0C7P0 127 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 ACPPP15309 386 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 AGXTP21549 392 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 CRHBPP24387 322 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 SRSF11Q05519 484 aaKnown RBP18.7■□□□□ 0.58
COL9A3-201ENST00000343916 PIGFQ07326 219 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 GTF2H3Q13889 308 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 ERAP2Q6P179 960 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 FBXO46Q6PJ61 603 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-201ENST00000343916 GALNT5Q7Z7M9 940 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 TMPRSS11BQ86T26 416 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 SERPINA11Q86U17 422 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 OR7G3Q8NG95 312 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 ATL1Q8WXF7 558 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 NXPE3Q969Y0 559 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 ZFYVE19Q96K21 471 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 COG8Q96MW5 612 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 FANCEQ9HB96 536 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 USE1Q9NZ43 259 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 TMEFF2Q9UIK5 374 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-201ENST00000343916 SH2B3Q9UQQ2 575 aa18.7■□□□□ 0.58
COL9A3-201ENST00000343916 RUVBL1Q9Y265 456 aaKnown RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms