RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ANKRD13BQ86YJ7 626 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FIBCD1Q8N539 461 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 OR52J3Q8NH60 311 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 CDADC1Q9BWV3 514 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 EVA1AQ9H8M9 152 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 IFT46Q9NQC8 304 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FKBPLQ9UIM3 349 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 PADI3Q9ULW8 664 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 OGDHQ02218 1023 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 CSTF1Q05048 431 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 TMEM198Q66K66 360 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 LHFPL3Q86UP9 236 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FOLH1BQ9HBA9 442 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 SNTG1Q9NSN8 517 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 MAB21L2Q9Y586 359 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZFC3H1O60293 1989 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 MT-ND5P03915 603 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 GIMD1P0DJR0 217 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ENGP17813 658 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 RHCEP18577 417 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 MAGEA2P43356 314 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC10A7Q0GE19 358 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF460Q14592 562 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF227Q86WZ6 799 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 CCDC28AQ8IWP9 274 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 UMODL1-AS1Q8N2C9 162 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 IMP4Q96G21 291 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 UCK2Q9BZX2 261 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 CFAP97Q9P2B7 532 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 PRAMEF11O60813 436 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 IL3P08700 152 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 LINGO3P0C6S8 592 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 RPP38P78345 283 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FGL1Q08830 312 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ANKRD46Q86W74 232 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 COX18Q8N8Q8 333 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 DENND6BQ8NEG7 585 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF563Q8TA94 476 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 GTPBP3Q969Y2 492 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 DOHHQ9BU89 302 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FBXO10Q9UK96 956 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FOXO6A8MYZ6 492 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF182P17025 639 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FMO3P31513 532 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 GRK6P43250 576 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ACTA2P62736 377 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ACTG2P63267 376 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 TLR1Q15399 786 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 NANOGP8Q6NSW7 305 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 AMZ2Q86W34 360 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZFAND4Q86XD8 727 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FAM156AQ8NDB6 213 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC2A13Q96QE2 648 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 NANOGQ9H9S0 305 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 MLXQ9UH92 298 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 GRID2O43424 1007 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 TLX3O43711 291 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 RENP00797 406 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 CXCR4P61073 352 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC13A2Q13183 592 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 SF1Q15637 639 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 PLEKHG7Q6ZR37 379 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF767PQ75MW2 155 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ZSWIM9Q86XI8 627 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 TRPM4Q8TD43 1214 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 PIWIL1Q96J94 861 aaKnown RBP10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 CORO1BQ9BR76 489 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 PREBQ9HCU5 417 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 LIPT1Q9Y234 373 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 A0A1W2PRB8 838 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CENPBD1B2RD01 187 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 H0Y858 1186 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 NDUFB5O43674 189 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 CKMT2P17540 419 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 NDUFV1P49821 464 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 PLEKHN1Q494U1 663 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 CYBRD1Q53TN4 286 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 EPYCQ99645 322 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 IFT27Q9BW83 186 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 WRAP73Q9P2S5 460 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 COPS7AQ9UBW8 275 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 FKBP7Q9Y680 259 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 ARL5AQ9Y689 179 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 LTBP3Q9NS15 1303 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 MYBPHLA2RUH7 354 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 AOC2O75106 756 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 SIX1Q15475 284 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 ISLR2Q6UXK2 745 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC22A16Q86VW1 577 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 PNLDC1Q8NA58 520 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 ABCA3Q99758 1704 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 ADM5C9JUS6 153 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 MTHFD1P11586 935 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 UQCRC2P22695 453 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 DCKP27707 260 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 NRG1Q02297 640 aaPredicted RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 S100A16Q96FQ6 103 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 PIP5K1AQ99755 562 aa10□□□□□ -0.81
CCDC88A-202ENST00000336838 C12orf65Q9H3J6 166 aaKnown RBP10□□□□□ -0.81
CCDC88A-202ENST00000336838 PLEKHA1Q9HB21 404 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms